<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24470

Description Uncharacterized protein
SequenceMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHTVSF
Length661
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.684
Instability index59.55
Isoelectric point9.09
Molecular weight72076.82
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24470
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     500.47|      86|      87|     123|     208|       1
---------------------------------------------------------------------------
   20-  116 (97.70/35.99)	ISMKLQHVDSiiPPQKpseQYDRMKNFKNM...LD..RI.LQLLQisKSTIqpAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQppAGQ.APNS.....SILQ........QQ.Q
  117-  194 (131.99/51.35)	TSQNLQQHD.............SHTNPQAS...LS..SM.STGLQ..SSGV..AGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLE..AAQ.GGNF.....NSLQ........HG.S
  195-  282 (109.32/41.19)	VSGALQQGNT..GPMQ....GTVNTQPQTSsgmLShnSM.ST.MQ..PNG...NSMQ.ANASSLQQLK.QQQQDHHMMQSQQMKRQM..FQQyQQKQ.....QMLQ........QQfP
  283-  361 (77.23/26.83)	IQQQLQKQQQ..VQMQ...VPQLHAGNDVN...ES..KA.RQGTA.vKPGV..Y.QQHLG..QRSNY...........YHQQLK.......Q.GGAFpisspQNLQasspqishH...
  362-  425 (84.22/29.96)	.SPQVDQHNL..LPSQ.......................vKTGTP..LNS...ANSPYVPSPSPSVAPSPIPVDSDK.PHSNISSLT........NT.....GQTG........HQ.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      15|      28|     514|     528|       2
---------------------------------------------------------------------------
  514-  528 (25.51/17.45)	GNGSRTAVGEDLVAM
  543-  557 (25.70/17.63)	GSGASKKMKRDISAM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24470 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQR
2) PVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQ
3) QQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGI
446
90
278
488
275
442










Molecular Recognition Features






MoRF SequenceStartStop




1) LDRILQL
50
56