<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24468

Description Uncharacterized protein
SequenceAGLQPDARARIVNKITETLKKHLPASAPDGVNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAAGNAQVIPNQNNSTPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHTSPIMPLRLLVPAGYPKCSPVLLDKFLDEQRNSDDLSSQAKSKFGVLLRGLDEPMSLREIARTWDACARGAIAEYAQKSGGGSFSSSYGRWETCVV
Length1267
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.802
Instability index70.97
Isoelectric point9.35
Molecular weight139842.92
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24468
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     261.68|      38|      39|     845|     882|       4
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  319-  352 (39.76/ 7.37)	L.ER....NQLI.GQ.QN.G.AVEMQQQQRLP..AQSNN.....L.LNVQQ
  353-  401 (39.00/ 7.05)	TQQQmlnqQSMPlHQPQQlGSQANMSSLQQQQ..QNQQQqrmhmLQMKAQQ
  609-  641 (47.53/10.63)	IQQQ....FQPP.A.....GQA.PNSSILQQQ..QTSQN.....LQQHDSH
  704-  742 (41.48/ 8.09)	L.QH....GSVS.GALQQ.GNTGPMQGTVNTQpqTSSGM.....LSHNSMS
  843-  878 (53.46/13.11)	..RS....NYYH.QQLKQ.GGAFPISSPQNLQ..ASSPQ.....ISHHSPQ
  879-  909 (40.46/ 7.66)	VDQH....NLLP.SQVKT.GT..PLNS.......ANSPY.....VPSPSPS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.36|      27|      28|     199|     226|       5
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  199-  226 (46.84/16.40)	SLMQPhIQQQQSLLQPTQMQSTQQSMMQ
  229-  255 (38.74/ 9.57)	SGLHP.VQSTVPQTQPMSRQSVTQSGIQ
  778-  798 (35.78/ 8.13)	RQM...FQQYQ.QKQQM...LQQQFPIQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.68|      23|     120|     525|     547|       6
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  525-  547 (38.37/23.92)	AELSD..........LSNKISMKLQHVDSIIPP
  548-  580 (30.31/17.23)	QKPSEqydrmknfknMLDRILQLLQISKSTIQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.01|      12|      19|     290|     301|       8
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  290-  301 (23.53/ 7.10)	HQQPSLQRQQPN
  307-  318 (24.48/ 7.74)	QQQQQLMGQQPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     109.01|      19|      19|     663|     681|      10
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   74-   95 (21.77/ 6.75)	AGNAQ..VIPNQNNSTpglPSEGS
   96-  115 (23.17/ 7.80)	NQAQPsaIPLMSQQQA....RQPN
  663-  681 (37.61/18.59)	MQHVP..VPPTTNFSA...PTQQN
  685-  700 (26.47/10.27)	IQHQP..V...SNLEA...AQGGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.62|      15|      37|     759|     777|      11
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  759-  777 (23.18/16.04)	QQLKQQQQdhhmMQSQQMK
  799-  815 (24.44/ 7.29)	QQLQKQQQ..vqMQVPQLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.05|      19|      19|      22|      40|      12
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   22-   40 (30.17/18.99)	HLPASAPDGVNELQKIAVR
   44-   62 (27.87/16.96)	KIYTAATNQSDYLRKISLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      15|      28|    1028|    1042|      13
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 1028- 1042 (25.51/19.52)	GNGSRTAVGEDLVAM
 1057- 1071 (25.70/19.73)	GSGASKKMKRDISAM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.95|      11|      44|     453|     463|      16
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  453-  463 (21.01/ 9.78)	SSMQQRLQTSG
  649-  659 (19.94/ 8.78)	SSMSTGLQSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.26|      21|      30|     911|     939|      18
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  911-  931 (36.76/12.24)	APSPIPVDSDKPHSNISSLTN
  943-  963 (32.50/21.50)	APQTQSIAVNTPGISASPLLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.12|      24|     346|     141|     164|      20
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  141-  164 (45.31/25.54)	QNV..SVMPQNTMNNGLAQ.GTSQ.DIY
  486-  513 (30.81/14.84)	QEVssSTSADSTTQTGLAGaGDWQeEIY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24468 with Med15 domain of Kingdom Viridiplantae
Unable to open file!