<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24467

Description Uncharacterized protein
SequenceQSDYLRKISLKMLSMETKTQQAAGNAQVIPNQNNSTPGLPSEGSNQAQPSAIPLMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHT
Length1121
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.02
Grand average of hydropathy-0.867
Instability index73.13
Isoelectric point9.43
Molecular weight123893.85
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24467
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.70|      20|      22|     116|     136|       3
---------------------------------------------------------------------------
  116-  136 (34.54/10.39)	QRQMAG.rQQQQQSQQLIYQQQ
  245-  266 (31.16/ 6.24)	QRQQPNipLQQQQQQQLMGQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     646.61|      87|      87|     527|     613|       5
---------------------------------------------------------------------------
   15-   90 (78.94/14.15)	.......ME...........TKTQQ.......................AAGNAQVIPNQ.............................NNST......PGLPsEGSN....Q...AQP....S...A..IP....................LMSQQQA......RQP....................NT........TSVQAsS...LT..NIGQNLP..GvNQ.......TSTMQ
   94-  204 (74.94/12.99)	VMPqnT.MN...........NGLAQ.......................GTSQ..DIYAAqrqmagrqqqqqsqqliyqqqqmlmkqklQQNS......LMQP.HIQQ....QqslLQP....T...QMQSTQQS.................MMQ...MSSG..LHPV....................QS....tvpQTQP.......MS..R.....Q..S.VT.......QSGIQ
  331-  417 (79.91/14.42)	.......................QQ.......................QQNQ.....QQ.............................QRMH......MLQM.KAQQ....T...QQQ....Q...HAQQPPMGlmqpqsqhnqlqqsqqhLMSQFQSQPN..QLQQ....................QL.......GMQQQ.......S..SMQQRLQ..T.SG.......GMLLQ
  428-  527 (51.71/ 6.26)	IQ...A.QRglqevssstsaDSTTQ...............tglagagdWQEEIYQMIKS.............................LKDQyfaelsDLSN.KISM....K...LQH....V...D......S.................IIPPQKPSE.....QY....................DR.......MKNFKN.M...LD..RILQLLQisK.ST.......I....
  529-  613 (143.77/32.93)	..P..A.MR...........DKVPQ.......................YEKQIISILNS.............................QRRK......PVQP.QIQQ....Q...FQP....P...AGQAPNSS.................ILQQQQTSQN..LQQH....................DS.......HTNPQA.S...LS..SMSTGLQ..S.SG.......VAGMQ
  617-  701 (79.67/14.35)	VPP..T.TN...........FSAPT.........................Q.....................................QNGA......NI...........Q...HQPvsnlE...AAQGGNFN.................SLQHGSVSGA..LQQG....................NTgpmqgtvNTQPQT.SsgmLShnSMST.MQ..P.NG........NSMQ
  707-  830 (59.76/ 8.59)	L......................QQlkqqqqdhhmmqsqqmkrqmfqqY.QQKQQML...............................QQQF......PIQQ.QLQKqqqvQ...MQV....PqlhAGNDVNES.................KARQGTAVKPgvYQQHlgqrsnyyhqqlkqggafpiSS.......PQNLQA.S...SP..QISH..H..S.PQ.......VD..Q
  833-  921 (77.91/13.85)	LLP..SqVK...........TGTP.............................LNSANS.............................PYVP......SPSP.SVAP....S...PIP....V...DSDKPHSN.................ISSLTNTGQT..GHQQ....................TS........LAPQTqS...IA..VNTPGIS..A.SPllaeftsVDGSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      15|      26|     977|     991|       7
---------------------------------------------------------------------------
  977-  991 (25.51/15.25)	GNGSRTAVGEDLVAM
 1006- 1020 (25.70/15.41)	GSGASKKMKRDISAM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24467 with Med15 domain of Kingdom Viridiplantae
Unable to open file!