<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24466

Description Uncharacterized protein
SequenceMSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYQQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQLNSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAGAGDWQEEIYQMIKSLKDQYFAELSDLSNKISMKLQHVDSIIPPQKPSEQYDRMKNFKNMLDRILQLLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQMLQQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGISASPLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRTAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDISAMPLNVSSAGSVDDSFKQTFSVDTPDLQSTATSRAKRRKIEVNHALLEEIEEINQGLIDTELRVCEDDDESLIATSEGTVIKCTYTAVAVSPSLKSMLASAHTVSF
Length1070
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.867
Instability index74.73
Isoelectric point9.42
Molecular weight118490.87
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24466
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     211.44|      39|      39|     262|     300|       1
---------------------------------------------------------------------------
   54-   96 (38.63/ 6.17)	TSQDIyAAQRQMAGRQQQQQSQQliyqQQQML.MK...Q.KLQQNSLM
  262-  300 (77.83/22.69)	QPQQL.GSQANMSSLQQQQQNQQ....QQRMH.ML...QMKAQQTQQQ
  312-  339 (42.14/ 7.65)	QPQ....SQHN.....QLQQSQQ........HlMS...QFQSQPNQLQ
  640-  679 (52.84/12.16)	QPNGN.SMQANASSLQQLK..QQ....QQDHH.MMqsqQMKRQMFQQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     150.73|      27|      27|     184|     210|       3
---------------------------------------------------------------------------
  186-  215 (44.20/10.40)	QQPSLQRQQPNIPLQQQQQQQLMGQqpnLE
  216-  240 (35.74/ 6.72)	RN.QLIGQQ.NGAVEMQQQQRLPAQ...SN
  340-  365 (35.04/ 6.42)	QQLGMQQQS.SMQQRLQTSGGMLLQ...QN
  683-  706 (35.74/ 6.72)	QQM.LQQQFP.IQQQLQKQQQVQMQ...V.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     129.27|      26|      26|     470|     495|       4
---------------------------------------------------------------------------
  102-  127 (31.31/ 7.99)	QQQSLLQPtQMQSTQQSMMQ.MSSGLH
  435-  457 (31.94/ 8.32)	HVDSIIPP.QKPSEQY...DRMKNFKN
  461-  486 (30.80/ 7.72)	RILQLLQI.SKSTIQPAMRDKVPQYEK
  753-  776 (35.23/10.06)	PISSPQNL.QASS..PQISHHSPQVDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.80|      30|      87|     518|     548|       5
---------------------------------------------------------------------------
  490-  518 (36.57/ 9.74)	SILNSQRRKPVQPQIQQQFQPPAG...QA..PNS.
  519-  548 (53.54/16.49)	SILQQQQTSQNLQQHDSHTNPQAS...LS..SMST
  606-  638 (34.68/ 6.67)	GALQQGNTGP..MQGTVNTQPQTSsgmLShnSMST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.80|      19|      20|     568|     586|       6
---------------------------------------------------------------------------
  567-  585 (35.26/18.80)	TNFSAPTQQNGANIQHQPV
  586-  604 (32.53/16.68)	SNLEAAQGGNFNSLQHGSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.61|      22|     122|       5|      29|       7
---------------------------------------------------------------------------
    5-   26 (39.51/12.28)	QARQPNTTSVQASSLTNIG..QN.L
  130-  154 (29.09/11.90)	QSTVPQTQPMSRQSVTQSGiqQNqL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      15|      28|     923|     937|       9
---------------------------------------------------------------------------
  923-  937 (25.51/19.36)	GNGSRTAVGEDLVAM
  952-  966 (25.70/19.56)	GSGASKKMKRDISAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      23.73|      11|      52|     794|     806|      10
---------------------------------------------------------------------------
  850-  861 (11.53/ 6.62)	GI.SaSPLLAEFT
  862-  873 (12.20/ 7.64)	SVdG.SQANMPTQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24466 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSQQQARQPNTTSVQASSLTNIGQNLPGVNQTSTMQNVSVMPQNTMNNGLAQGTSQDIYAAQRQMAG
2) NSVQQSVPSLLQQPQQSVGRQQQQQAQPSMHQQPSLQRQQPNIPLQQQQQQQLMGQQPNLERNQLIGQQNGAVEMQQQQRLPAQSNNLLNVQQTQQQMLNQQSMPLHQPQQLGSQANMSSLQQQQQNQQQQRMHMLQMKAQQTQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAQRGLQEVSSSTSADSTTQTGLAG
3) PLLAEFTSVDGSQANMPTQVPTKSDAAERPMDRLLKALRTTQR
4) PVQPQIQQQFQPPAGQAPNSSILQQQQTSQNLQQHDSHTNPQASLSSMSTGLQSSGVAGMQHVPVPPTTNFSAPTQQNGANIQHQPVSNLEAAQGGNFNSLQHGSVSGALQQGNTGPMQGTVNTQPQTSSGMLSHNSMSTMQPNGNSMQANASSLQQLKQQQQDHHMMQSQQMKRQMFQQYQQKQQ
5) QKLQQNSLMQPHIQQQQSLLQPTQMQSTQQSMMQMSSGLHPVQSTVPQTQPMSRQSVTQSGIQQNQ
6) QQQFPIQQQLQKQQQVQMQVPQLHAGNDVNESKARQGTAVKPGVYQQHLGQRSNYYHQQLKQGGAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLNSANSPYVPSPSPSVAPSPIPVDSDKPHSNISSLTNTGQTGHQQTSLAPQTQSIAVNTPGI
1
155
855
499
88
687
67
399
897
684
153
851










Molecular Recognition Features






MoRF SequenceStartStop




NANANA