<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24440

Description Uncharacterized protein
SequenceRDVNGELRSFLLWPCGAAGEQVPVERMAAGVVEIFSQDRRARAQDVFLPFRRLFGSKTVETVVLEGHSVAEALARYAAESGVHNMVLGSATLSCFRRILWLQDLPHAVLKAMPCSCNVFIVSRHRLTIKLANQTQTDNSNTCSKIQSVSHRAFALQLRSQLQDKQSLHDLPDVNTPKSSGVSSSDSCSQARSSLSNSTSAAQSSESHRRRLFGSLCRKTPGRTGDTDFDATGQLKEFPYVSLSSTEESQRIDEVAKPRKELQDKPMMCVKACENHVQAKKKIQVLSNGCSEDLHKVQDALQWENFFKQKAAPENNKHFRAIEEAEMVKEAFTREAYSKHNAETVTNMATTEKAKVLDALLSTGKSCRRYSRHEIELATENFSDAKKIGEGGYGIVYRCILDHTEVAVKVIQQDSRGKIDEFFKEIDILSRLHHPHLVLLLGFCPEIGCLVYEYMENGSLEDQLIDNEGRQPLHWFLRFQIIFEVARGLAFLHGTKPEPIVHRDLKPGNILLDKNYVSKIGDVGFAKLISDLAPDGFTEYRDDTVIAGTMYYMDPEYQLTGTVRPKSDLFALGIIILQLLTGKRPQGLILSTEEAIRKGTFPEILDVSLNDWPIAEAEMLAKLGLHCTALRCRDRPDLEQEVLPELENVLSRVTSSWKFESPKAVVPSHFICPISQEVMDDPCVAADGHTYERRAIEAWLEEHKISPITKHMLPSLTIIPSHSLHEAIQQWKQSSR
Length735
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.344
Instability index51.19
Isoelectric point6.39
Molecular weight82593.19
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24440
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.53|      50|      50|     535|     584|       1
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  496-  530 (38.69/22.98)	PePIV.HRD..LKPGNI.LLDKN...Y.....VSKIGDVgFA.......KLISD..
  535-  583 (78.85/54.58)	..GFTEYRDDTVIAGTMYYMDPE...YQLTGTVRPKSDL.FA.LGIIILQLLTGKR
  584-  634 (61.00/40.54)	PqGLILSTEEAIRKGT.F...PEildVSLNDWPIAEAEM.LAkLGLHCTALRCRDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.66|      40|      43|     139|     180|       2
---------------------------------------------------------------------------
  139-  180 (60.72/48.42)	SNTCSKIQS.VSHRAFALQlRSQLQDKQSLHDLPDvNTPKSSG
  184-  224 (64.94/42.56)	SDSCSQARSsLSNSTSAAQ.SSESHRRRLFGSLCR.KTPGRTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.45|      23|      53|     309|     331|       7
---------------------------------------------------------------------------
  309-  331 (39.07/23.69)	KAAPENNKHFRAI............EEAEMVKEAF
  347-  381 (28.38/15.55)	MATTEKAKVLDALlstgkscrrysrHEIELATENF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24440 with Med32 domain of Kingdom Viridiplantae
Unable to open file!