<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24426

Description Uncharacterized protein
SequenceAHGLPQGSNQAQTSVVPLMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNINLQQQHQQLMGQQPNVQQNQLIGQQNGTMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSSPQQQQQNQQLQQLLGTVPNVSNMQRIHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQPHRGLQEVSSSTSADSAQTGHAGAGDWQEEIYQMIKSLKDQYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIAVNTPGISASPLLAEFTSVDGSQANMLTQAPTKSSAVERPLDRLLKALRTTQRESLNAAVSDIRSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTATSQAKWQKIEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMSPIMPLRLLVPASYPKCSPVLLDKSPDEQRNSEDLSMKAKSKFSILLRGLAEPMSLREIARTWDACARKTIAEYAQKTGGGSFSSSYGCWENCVGA
Length1194
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.764
Instability index73.25
Isoelectric point9.22
Molecular weight131563.84
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24426
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     598.55|      77|      77|     642|     718|       6
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   51-  164 (59.26/ 9.00)	TSTMQ.NA.SVMPQNTMNN.GlaqgtsqdiyaaqrqmagrqqqqqsqQ....LIYHQQQMLM............................K.QKLQ..............QN.SL.......MQPHIQQQ..qsllqptqmqssqqsmmqmssglhPGQS...........TVP...QTQPMA.MQSAT
  165-  273 (66.87/11.31)	QSGIQQNQlNSVQQSVQSL.L..........................Q....QPQQSVGRQQQ................QA....QpSM.......hqqpslqspqpninLQ.QQ.......HQQLMGQQPN..vqqnqligqqngtmemqqqqrlPVQS...........NNLLNVQQTQQM.LNQTS
  274-  335 (52.04/ 6.81)	MPLHQPQQ.LGSQSNMSSP.Q..........................Q....QQQNQQLQQLL................GTvpnvS.NMQRiHMLQ.............tKV.QQ.......PQQQQHAQQP.........................................................
  357-  419 (68.30/11.74)	MSQFQSQP.NQLQ.......Q..........................Q....L.......GMQ................QS...........SMQQ..............RL.QT.......SGGMLLQQNN...............mdqqkqfiqPHRG................LQEVSSS.TSADS
  420-  496 (55.49/ 7.86)	AQT........GHAGAGDW....................................QEEIYQMI................KS.......LKD.QYFA..............EL.SElfnkisvKLQHVDSIIP........................PQKP...seqydrmkSFKIMLERILQM.L.QIS
  497-  589 (56.59/ 8.19)	KSTIQP....AMRDKVPQYeK..........................QiisiLNSQRRKPVQP................QI....Q......QHFQ..ppagqapnssisQQ.QQ.......PSQTLQQH..............................dshtnpqaslsSMSTGLQSSSAAgIQHVP
  590-  662 (89.59/18.20)	APPTKNFS.APTQQNGANI...................................QHQADSNLE................TA....Q.GGNF.NSLQ...............H.GS.......VSSALQQGST.......................vPMQG...........TMNTQLQTSSSM.LSHNS
  663-  718 (91.91/18.90)	MSTMQPNG.NSMQANASSF.Q..........................Q....LKQQQQDHQMM................QS....Q.QMKR.QMFQ..............QY.QQ.......KQQMLQQQLP.........................................................
  719-  799 (58.51/ 8.77)	..................V.Q..........................Q....HLQKQQPVQMQipqlhagndvnelkvrQG....T.AMKP.GMYQ..............QHlGQ.......RSNYYHQQLK...................qsgafPISS...........PQN.NLQASSPQ.ISHHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.93|      26|      28|     800|     825|       7
---------------------------------------------------------------------------
  800-  821 (36.06/14.46)	.........PQVDQHNPLPSQVKT...GTPLHSA
  822-  848 (32.79/12.42)	NSPFvpspsPSI.APSPIP..VDS...AKP.HSN
  849-  881 (30.07/10.72)	ISSL.tntgQAGHQQTSLVPQTQSiavNTPGISA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.26|      41|     232|     882|     925|       8
---------------------------------------------------------------------------
  882-  914 (48.43/32.12)	.........SPLLA....EFTSVD..........GSQANMLTQAPTKSSAVERPLD
  917-  961 (39.86/34.13)	LKALRTTQrESLNA....AVSDIRsvvsmidriaGS.......APGNGSRAAVGED
  962-  997 (48.98/29.45)	LVAMTKCR......lqarNFITND..........GSGASKKMKRDT..SAM..PLN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24426 with Med15 domain of Kingdom Viridiplantae
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