<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24425

Description Uncharacterized protein
SequenceMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNINLQQQHQQLMGQQPNVQQNQLIGQQNGTMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSSPQQQQQNQQLQQLLGTVPNVSNMQRIHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQPHRGLQEVSSSTSADSAQTGHAGAGDWQEEIYQMIKSLKDQYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIAVNTPGISASPLLAEFTSVDGSQANMLTQAPTKSSAVERPLDRLLKALRTTQRESLNAAVSDIRSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTATSQAKWQKIEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMSPIMPLRLLVPASYPKCSPVLLDKSPDEQRNSEDLSMKAKSKFSILLRGLAEPMSLREIARTWDACARKTIAEYAQKTGGGSFSSSYGCWENCVGA
Length1176
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.772
Instability index73.95
Isoelectric point9.22
Molecular weight129777.88
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24425
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     668.29|      76|      77|     488|     563|       7
---------------------------------------------------------------------------
    8-  132 (60.31/11.75)	Q.PNSSTSVQA..SSlanigqnlpgvNQTSTMQNA..SVMPQ......NTMNNGLAQGT.........sqdiyaaqrqmagrqqqqqsqQLIYHQ....QQMLMK..QK..LQ.....................Q.....N..SLMQPHI..Q......QQqsllqptqmqssqqsmmqmssgL.HPGQS
  133-  208 (53.98/ 9.53)	TVPQ..................................TQPM..A.MQSATQSGIQQNQ.......lN.....................SVQQ.......SVQSL..L...QQpqqsvgrqqqqaqpsmhqqpsL.....Q..SP.QPNInlQ......QQ......................H.QQLMG
  237-  320 (80.30/18.77)	QSNN..LLNVQ..QT...........QQMLNQTSMplH.QPQqlG.SQSNMSSPQQQQQ.......nQ.....................QLQQLL....GTVPNV..SN..MQ.....................RihmlqT..KVQQPQQ..Q......QH......................AqQPPMG
  344-  389 (60.11/11.68)	S............QP...........NQ.LQQQLG..MQQ........SSMQQRLQTSG....................................gmllQQ......NN..MD.....................Q.....Q..K...............QF......................I.QPHRG
  391-  451 (52.67/ 9.07)	QEVSSSTS..A..DS...........AQT..GHAG..AGDWQ..E.EIYQMIKSLKDQ...................................YF....AELSEL..FNkiSV.....................K.....L..QHVDSII....................................PP..
  452-  522 (72.33/15.97)	..........Q..KP...........SE...QYDR..MKSFK..I.MLERILQMLQISKstiqpamrD.....................KVPQYE....KQIISI..LN..SQ.....................R.....R..KPVQPQI..Q......QH......................F.QPPAG
  523-  602 (109.18/28.91)	QAPNSSISQQQ..QP...........SQTLQQHDS..HTNPQ..A.SLSSMSTGLQSSS....aagiQ.....................HVPAPP....TKNFSA..PT..QQ.....................N.....G..ANIQHQA..D......SN......................L.ETAQG
  603-  655 (59.18/11.35)	GNFNS..LQHG..SV...........SSALQQ..G..STVPM..Q...GTMNTQLQTSS..............................................smLS..HN.....................S.....M..STMQP.....................................NGNSM
  733-  809 (62.63/12.57)	TAMKPGMYQQHlgQR...........SNYY..HQQ..LKQSG..AfPISSPQNNLQASS....pqisH.....................HSPQVD....QH..NP..LP..SQ.....................V.....KtgTPLH.SA..N......SP......................F.VP...
  857-  929 (57.60/10.80)	NTP..GISA.................SPLLAEFTS..VDGSQ..A....NMLTQAPTKS........S.....................AVERPL....DRLLKA..LR..TT.....................Q.....R..ESLNAAV..SdirsvvSM......................I.DRIAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.24|      15|      15|     686|     700|       8
---------------------------------------------------------------------------
  686-  700 (29.91/11.66)	QQYQQKQQMLQQQLP
  702-  716 (30.33/11.94)	QQHLQKQQPVQMQIP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24425 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQ
2) MSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLAQGTSQDIYAAQRQMAG
3) QRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIA
4) SVDGSQANMLTQAPTKSSAVERPLDRLLKALRT
5) SVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNINLQQQHQQLMGQQPNVQQNQLIGQQNGTMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSSPQQQQQNQQLQQLLGTVPNVSNMQRIHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQPHRGLQEVSSSTSADSAQTGHAGAGD
88
1
504
872
161
154
68
855
904
411










Molecular Recognition Features






MoRF SequenceStartStop




NANANA