<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24422

Description Uncharacterized protein
SequenceMHPLNLFTFLHHVCRMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAHGLPQGSNQAQTSVVPLMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNINLQQQHQQLMGQQPNVQQNQLIGQQNGTMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSSPQQQQQNQQLQQLLGTVPNVSNMQRIHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQPHRGLQEVSSSTSADSAQTGHAGAGDWQEEIYQMIKSLKDQYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIAVNTPGISASPLLAEFTSVDGSQANMLTQAPTKSSAVERPLDRLLKALRTTQRESLNAAVSDIRSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTATSQAKWQKIEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMVSF
Length1187
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.771
Instability index70.69
Isoelectric point9.32
Molecular weight131246.54
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24422
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     753.39|      82|      82|     191|     272|       3
---------------------------------------------------------------------------
   94-  158 (81.59/16.67)	SNQ...A.Q.TSVV.PLMSQQQAR.QPN...S......STSV....Q.....aSSL......ANIGQN..L..........................PG.........VNQTS..T.MQNA..SV...M......PQ..NT....MN..........NGLAQG
  191-  272 (152.73/39.92)	MKQK.LQ.Q.NSLMQPHIQQQQSLLQPT...Q......MQSS....Q......QSM......MQMSSG..L...............H..........PG..QST....VPQTQPMA.MQSATQSG...I......QQ..NQ....LNS.VQ..Q.SVQSLLQQ
  278-  325 (67.86/12.18)	GRQQ..Q.Q....AQPSMHQQPSLQSPQpniN......LQQQ....H......QQL......M....G..Q...............Q..........P.....N....V..........................QQ..NQ..................LIGQ
  326-  392 (81.35/16.59)	........Q.NGTME..MQQQQRL..PV...QsnnllnVQQT....Q......QML......NQTSMP..L...............H.......................QPQQLG.SQSNMSSP..........QQ..QQ....QN......Q.QLQQLLGT
  399-  477 (68.58/12.41)	M.QR.IH.....MLQTKVQ......QPQ...Q......QQHA....Q......QPP......M....G..LmqpqsqhnqlqqsqqH.........lMS..Q.......FQSQPNQ.LQQ..QLG...M......QQ..SS....MQQrLQ..T.SGGMLLQ.
  478-  530 (56.25/ 8.38)	..............QNNMDQQKQFIQP...................H......RGL......QEVSS...................................ST....SADS......AQTGHAG...A......GD..WQ.....EE.IY..Q.MIKSLKDQ
  542-  619 (57.13/ 8.67)	ISVK.LQ.HvDSIIPP....QKPSEQYD...R......MKSF....KimleriLQM......LQIS...................................KST....I...QP.A.MRD....K...V......PQyeKQiisiLNS..QrrK.PVQPQIQQ
  622-  723 (65.69/11.47)	QPPA.GQaP.NSS....ISQQQQPSQTL...Q......QHDShtnpQ......ASL......SSMSTG..L...............QsssaagiqhvPA..PPTknfsAPTQQNGAnIQHQADSN...L......ET..AQ.ggnFNS.LQ..HgSVSSALQQ
  794-  873 (57.25/ 8.71)	QKQQmLQ.Q.QLPVQQHLQKQQ....PV...Q......MQIP....Q......LHAgndvneLKVRQGtaM...............K..........PGmyQQH....LGQRSNYY.HQQLKQSGafpI......SS..PQ.....NN...............
  874-  944 (64.96/11.23)	LQAS.SP.Q.ISHHSPQVDQHNPL..PS...Q......VKTG........................TP..L...............H..........SA..NSP...fVPSPSP.....SIAPSP...IpvdsakPH..SN....ISS.LT..N.TGQA....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.06|      26|      28|     963|     988|       4
---------------------------------------------------------------------------
  960-  985 (41.49/22.58)	VNTPGISAS...PLLAE..............FTSVDGSQANML
  986- 1014 (30.83/14.93)	TQAPTKSSAverPLDRL..............LKALRTTQRESL
 1033- 1069 (20.74/ 7.69)	GSAPGNGSR...AAVGEdlvamtkcrlqarnFITNDGSGA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.01|      16|      22|     753|     773|       5
---------------------------------------------------------------------------
  753-  768 (28.43/15.86)	QPNGNSMQANASSFQQ
  776-  791 (30.58/ 7.58)	HQMMQSQQMKRQMFQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24422 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQ
2) QRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIA
3) SVDGSQANMLTQAPTKSSAVERPLDRLLKALRT
4) SVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNINLQQQHQQLMGQQPNVQQNQLIGQQNGTMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSSPQQQQQNQQLQQLLGTVPNVSNMQRIHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQPHRGLQEVSSSTSADSAQTGHAGAGD
5) TQQAPGNAQVIPNQNNSAHGLPQGSNQAQTSVVPLMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLAQGTSQDIYAAQRQMAG
192
608
976
265
70
258
959
1008
515
172










Molecular Recognition Features






MoRF SequenceStartStop




NANANA