<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24421

Description Uncharacterized protein
SequenceAASPHRRPPVLYIHKSTSIHLLETYESLIPTMDANWRPTQGSDPAAAAAGVDPNAPPAAGGDWRAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAHGLPQGSNQAQTSVVPLMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNINLQQQHQQLMGQQPNVQQNQLIGQQNGTMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSSPQQQQQNQQLQQLLGTVPNVSNMQRIHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQPHRGLQEVSSSTSADSAQTGHAGAGDWQEEIYQMIKSLKDQYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIAVNTPGISASPLLAEFTSVDGSQANMLTQAPTKSSAVERPLDRLLKALRTTQRESLNAAVSDIRSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTATSQAKWQKIEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMVSF
Length1251
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.768
Instability index70.49
Isoelectric point9.32
Molecular weight137887.77
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24421
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     274.63|      37|      38|     941|     977|       3
---------------------------------------------------------------------------
  264-  300 (43.38/ 8.39)	LMQPH.IQQqqslLQPTQMQSSQ...QS.MM..QMS...SG...LHPGQS
  347-  384 (42.59/ 8.07)	QAQPSmHQQ....PSLQSP...Q...PNiNLQQQHQqlmGQQP..NVQQN
  676-  712 (51.91/11.90)	PVQPQ.IQQ....HFQPPAGQAP...NS.SISQQQQ...PSQT.LQQHDS
  855-  890 (39.17/ 6.66)	QYQ.Q.KQQ....MLQQQLPVQQ...HL.QKQQPVQ...MQIPqLHAGN.
  937-  973 (59.03/14.82)	NLQAS.SPQ....ISHHSPQVDQ...HN.PLPSQVK...TGTP.LHSANS
  974- 1014 (38.55/ 6.40)	PFVPSpSPS....IAPSPIPVDSakpHS.NISSLTN...TGQA.GHQQTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     178.53|      42|      83|     304|     346|       4
---------------------------------------------------------------------------
  140-  173 (41.66/ 8.27)	N...........................................AQVIPNQNNSAHGLPQGS.NQAQTSVVPL......MS...........QQQ
  261-  346 (48.07/12.97)	QnslmqphiqqqqsllqptqmqssqqsmmqmssglhpgqstvpqTQPMAMQSATQSGIQQNQLNSVQQSVQSL......LQQPQQsVG...RQQQ
  390-  435 (45.20/ 9.62)	Q...........................................NGTMEMQQQQRLPVQSNNLLNVQQTQQMLnqtsmpLHQPQQ.LG...SQ..
  737-  777 (43.60/ 9.01)	H...........................................V.PAPPTKNFSAPTQQNGAN.IQHQADSN......LETAQ...GgnfNSLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.09|      31|      82|     442|     478|       5
---------------------------------------------------------------------------
  446-  480 (43.88/16.77)	QNQQLQQLLGtVPNVSNMQRihmLQTK....VQQPQQ..QQ
  513-  549 (46.22/14.07)	QPNQLQQQLG.MQQSSMQQR...LQTSggmlLQQNNMdqQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.21|      32|      82|     811|     845|       6
---------------------------------------------------------------------------
  200-  219 (28.80/ 7.74)	QTSTM.QNASVMP.QNTMNNGL.............
  780-  811 (53.94/24.57)	SVSSALQQGSTVPMQGTMNTQL...QTSSSMLSHN
  812-  846 (50.47/29.01)	SMSTMQPNGNSMQANASSFQQLkqqQQDHQMMQSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.22|      26|      28|    1027|    1052|       8
---------------------------------------------------------------------------
 1027- 1049 (33.43/19.22)	...PGISAS...PLLAE..............FTSVDGSQANML
 1050- 1078 (32.99/18.86)	TQAPTKSSAverPLDRL..............LKALRTTQRESL
 1097- 1133 (22.80/10.54)	GSAPGNGSR...AAVGEdlvamtkcrlqarnFITNDGSGA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.49|      13|     514|      52|      64|      11
---------------------------------------------------------------------------
   52-   64 (28.01/16.77)	DPNAPPAAG.GDWR
  568-  581 (22.48/11.88)	DSAQTGHAGaGDWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.41|      12|     524|     180|     191|      13
---------------------------------------------------------------------------
  180-  191 (20.16/10.50)	STSVQASSLANI
  724-  735 (20.25/10.59)	STGLQSSSAAGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.83|      19|     524|     120|     138|      14
---------------------------------------------------------------------------
  120-  138 (32.27/17.59)	LRKISLKMLSMET.KTQQAP
  605-  622 (18.94/ 6.83)	..KISVKLQHVDSiIPPQKP
  636-  652 (27.61/13.83)	LERI.LQMLQISK.STIQ.P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24421 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISLKMLSMETKTQQAPGNAQVIPNQNNSAHGLPQGSNQAQTSVVPLMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLAQGTSQDIYAAQRQMAG
2) KQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQ
3) MDANWRPTQGSDPAAAAAGVDPNAPPAAGGDWRAQLQ
4) QRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIA
5) SVDGSQANMLTQAPTKSSAVERPLDRLLKALRT
6) SVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNINLQQQHQQLMGQQPNVQQNQLIGQQNGTMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSSPQQQQQNQQLQQLLGTVPNVSNMQRIHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQPHRGLQEVSSSTSADSAQTGHAGAGD
123
256
32
672
1040
329
236
322
68
1023
1072
579










Molecular Recognition Features






MoRF SequenceStartStop




NANANA