<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24419

Description Uncharacterized protein
SequenceLGRRHAASPHRRPPVLYIHKSTSIHLLETYESLIPTMDANWRPTQGSDPAAAAAGVDPNAPPAAGGDWRAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAHGLPQGSNQAQTSVVPLMSQQQARQPNSSTSVQASSLANIGQNLPGVNQTSTMQNASVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPGQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQPSMHQQPSLQSPQPNINLQQQHQQLMGQQPNVQQNQLIGQQNGTMEMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSSPQQQQQNQQLQQLLGTVPNVSNMQRIHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQLQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQPHRGLQEVSSSTSADSAQTGHAGAGDWQEEIYQMIKSLKDQYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIAVNTPGISASPLLAEFTSVDGSQANMLTQAPTKSSAVERPLDRLLKALRTTQRESLNAAVSDIRSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTATSQAKWQKIEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMSPIMPLRLLVPASYPKCSPVLLDKSPDEQRNSEDLSMKAKSKFSILLRGLAEPMSLREIARTWDACARKTIAEYAQKTGGGSFSSSYGCWENCVGA
Length1349
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.745
Instability index70.98
Isoelectric point9.34
Molecular weight148669.11
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24419
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     268.80|      37|      38|     946|     982|       3
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  269-  305 (41.00/ 7.43)	LMQPH.IQQqqslLQPTQMQSSQ...QS.MM..QMS...SG...LHPGQS
  352-  389 (42.50/ 8.02)	QAQPSmHQQ....PSLQSP...Q...PNiNLQQQHQqlmGQQP..NVQQN
  681-  717 (49.05/10.58)	PVQPQ.IQQ....HFQPPAGQAP...NS.SISQQQQ...PSQT.LQQHDS
  860-  895 (40.26/ 7.15)	QYQ.Q.KQQ....MLQQQLPVQQ...HL.QKQQPVQ...MQIPqLHAGN.
  942-  978 (57.79/14.01)	NLQAS.SPQ....ISHHSPQVDQ...HN.PLPSQVK...TGTP.LHSANS
  979- 1019 (38.21/ 6.34)	PFVPSpSPS....IAPSPIPVDSakpHS.NISSLTN...TGQA.GHQQTS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     203.20|      43|      83|     309|     351|       4
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  119-  154 (34.63/ 6.85)	TN...QSDYLRK.ISLKMLSM......ETKTQQAPG...............................................NAQV...IPNQNN
  155-  191 (37.53/ 8.13)	SAHGLPQGS.NQ.AQTSVVPL......MS........QQQ...........................................ARQPnssTSVQAS
  319-  404 (49.43/13.37)	TQSGIQQNQLNS.VQQSVQSL......LQQPQQSVGRQQQqaqpsmhqqpslqspqpninlqqqhqqlmgqqpnvqqnqligqQNGT...MEMQQQ
  405-  442 (39.71/ 9.09)	QRLPVQSNNLLN.VQQTQQMLnqtsmpLHQPQQ.LGSQ........................................................SN
  524-  569 (41.90/10.06)	QQLGMQQSSMQQrLQTSGGML......LQQ..NNMDQQKQ.......................................fiqpHRGL...QEVSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.02|      19|      20|     758|     776|       5
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  733-  754 (23.12/ 7.22)	QSSSAAGIQHvpaPPTKNFSAP
  755-  773 (29.38/11.77)	TQQNGANIQH...QADSNLETA
  791-  809 (27.51/10.41)	QQGSTVPMQG...TMNTQLQTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.68|      19|      20|     818|     836|       6
---------------------------------------------------------------------------
  818-  836 (33.33/12.62)	MSTMQPNGNSMQANASSFQ
  838-  856 (33.35/12.63)	LKQQQQDHQMMQSQQMKRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.22|      26|      28|    1032|    1057|       7
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 1032- 1054 (33.43/17.25)	...PGISAS...PLLAE..............FTSVDGSQANML
 1055- 1083 (32.99/16.93)	TQAPTKSSAverPLDRL..............LKALRTTQRESL
 1102- 1138 (22.80/ 9.45)	GSAPGNGSR...AAVGEdlvamtkcrlqarnFITNDGSGA...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.49|      13|     524|      57|      69|      10
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   57-   69 (28.01/17.33)	DPNAPPAAG.GDWR
  573-  586 (22.48/12.28)	DSAQTGHAGaGDWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.70|      18|     171|     473|     492|      12
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  626-  650 (19.15/ 6.97)	KPSEQYDrmksfkiMLERILQMLQI
  651-  668 (26.55/ 8.30)	SKSTIQP.......AMRDKVPQYEK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24419 with Med15 domain of Kingdom Viridiplantae
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