<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24414

Description Uncharacterized protein
SequenceHFGSQVFQLPLHSILQCSSSLLFYWLVHCILVLFDNLACYAASADSAQTGHAGAGDWQEEIYQMIKSLKDQYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKSTIQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQHFQPPAGQAPNSSISQQQQPSQTLQQHDSHTNPQASLSSMSTGLQSSSAAGIQHVPAPPTKNFSAPTQQNGANIQHQADSNLETAQGGNFNSLQHGSVSSALQQGSTVPMQGTMNTQLQTSSSMLSHNSMSTMQPNGNSMQANASSFQQLKQQQQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPVQQHLQKQQPVQMQIPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRSNYYHQQLKQSGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSAKPHSNISSLTNTGQAGHQQTSLVPQTQSIAVNTPGISASPLLAEFTSVDGSQANMLTQAPTKSSAVERPLDRLLKALRTTQRESLNAAVSDIRSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTATSQAKWQKIEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMVSF
Length728
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.534
Instability index59.18
Isoelectric point8.12
Molecular weight79551.34
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24414
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     273.05|      37|      38|     418|     454|       1
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  156-  200 (32.43/ 8.92)	.....PQIQQH.fQPPAGQ.apNSSISQQQQPSQTL........QQHDSHTNPqaslssM
  201-  245 (40.33/13.15)	S....TGLQSS..SAAGIQ...HVPAPPTKNFSAPTqqnganiqHQADSNLET......A
  246-  281 (28.16/ 6.63)	QggnfNSLQHGsvSSALQQ...GSTVPMQGTMNTQL........QT.............S
  282-  311 (32.36/ 8.88)	S....SMLSHN..SMSTMQ...PN........GNSM........QANASSFQQ.....lK
  390-  418 (32.59/ 9.01)	G....QRSNYY..HQQLKQ...SGAF........PI........SSPQNNLQA......S
  419-  455 (64.56/26.15)	S....PQISHH..SPQVDQ...HNPLPSQVKTGTPL........HSANSPFVP......S
  457-  495 (42.63/14.39)	S....PSIAPS..PIPVDSakpHSNISSLTNTGQAG........HQQTS.LVP......Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.50|      20|      28|     312|     331|       2
---------------------------------------------------------------------------
  312-  331 (39.38/14.91)	QQQQDHQMMQSQQMKRQMFQ
  332-  350 (32.68/11.34)	QYQQKQQMLQ.QQLPVQQHL
  367-  386 (29.45/ 9.62)	NDVNELKVRQGTAMKPGMYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.43|      26|      28|     504|     529|       3
---------------------------------------------------------------------------
  496-  526 (37.76/24.28)	TQsiavnTPGISAS...PLLAE..............FTSVDGSQANML
  527-  555 (33.54/20.68)	TQ.....APTKSSAverPLDRL..............LKALRTTQRESL
  574-  610 (22.13/10.95)	GS.....APGNGSR...AAVGEdlvamtkcrlqarnFITNDGSGA...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24414 with Med15 domain of Kingdom Viridiplantae
Unable to open file!