<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24406

Description Uncharacterized protein
SequenceMFSVQSPRPLRARGGDAAVERGRELRRESKVGARTRAKLREAESSRKEIEERERLEAEEADYRRVWAKGNELFYTRRYQEAAAHYTEAVNKNPNEPAVFRNRAQCHIFLGALPQGLEDAEKCIELDPTYLMGYLCKAKVQALMQNYQSAMATYIEGLKRDPNSTIIIDGFKRCVTCIEKSKGGDVGIVDLEDILRDWHSDIYLSNELQKYMEEVAVLKKEASDERLRRMESEQTARTSEANHVQRQKETEEHLSKIQQELQQVKARQDEVANELQKANKHNEHAQNQLLELTESKERYNQLQSKHDVLLKERDAALEEVEKLRRRSAAMPCQFSLAELERATENFSTSTKFRECGVASVYRGVLRNMTVAIKVLRHDGQGRSQFEQGVAIHSRVRHPNLVTLLGACTELLTLVYEFLPNGSLEDFLSCEDKRRTLTWQIRIRIIAEICSALIFLHENRPEPIVHGDLHPANILLDANLVTKLSDFGIFHLLIQSNSNSTNHPVEAPIYVDPECLATRKMAPHSDVYSFGMVVLRLLTGKPPLGIKKIVEDAMEQGDLNSVVDTSAGEWPDVHIQQLAHIALSCTEQNSRYRPVLSGQLWTAVETMRDVAMLSSQSSSSLVQEESIIPSHFTCSISHEIMKDPQLTADGITYEGNSIREWFGRGKITSPFTNLPLQHQELIPNIALRSAIQEWLQQHSMVL
Length700
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.502
Instability index54.24
Isoelectric point6.08
Molecular weight79685.48
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
plasma membrane	GO:0005886	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24406
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.90|      23|      24|      54|      76|       1
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   37-   59 (31.69/20.23)	AKLREAESSRKEIEERERLEAEE
   60-   82 (39.21/26.83)	ADYRRVWAKGNELFYTRRYQEAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.48|      25|     291|       5|      29|       2
---------------------------------------------------------------------------
    5-   29 (43.60/22.84)	QSPRPLRARGGDAAVERGRELRRES
  302-  326 (40.88/21.05)	QSKHDVLLKERDAALEEVEKLRRRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.22|      23|      65|      83|     105|       3
---------------------------------------------------------------------------
   83-  105 (41.69/28.25)	AHYTEAVNKNPNEPAVFRNRAQC
  151-  173 (40.53/27.28)	ATYIEGLKRDPNSTIIIDGFKRC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.80|      26|      29|     224|     252|       5
---------------------------------------------------------------------------
  227-  252 (44.93/31.69)	RRMESE..QT.ARTSE.ANHVQRQKETEEH
  254-  283 (30.87/12.90)	SKIQQElqQVkARQDEvANELQKANKHNEH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24406 with Med32 domain of Kingdom Viridiplantae
Unable to open file!