<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24397

Description Uncharacterized protein
SequenceMTVGNYIPVSQVRDDVASAYREELEWQARNMLLPYKKMCAQRQVEAEAVLLESDDVPAAISEEIDKFNIGKLVLGSSSRSIFRRKLKGSKTATKISECIPSFCTAYVVSKGKLSFVRSATSDPCGTPKTISSSTVSSPSSRSLSSAPSECADRNGAAAVLFRQSSLSSQHDHALANINRRASPSGSGGSEISYHADTTLMANSHSIASGAQLSSSSSGDSVYKSFRRDSSPDIPDLQAAVSEIATNLKHSHDQDDLKLQIESMKVKLRHLQMLHECAHTEPVDSAQKLHNNLGIQRVEHEIKLREIDLTEEMVRRLLRRMEREEEEVAEREGQAIQSSSEQKATEGDGDHQNAGEINTGLKNAGRCLTEYNRYSWEHIQAATSSFSSDLVIGKGTYGTVYKAKFQHTVAAVKVLNSLEGFGTQQLQQELEVLGKIRHPHLLLLLGACPERGCVVYEYMENGSLDDALNHRRNGTPPLAWYDRVRVAWEVATAVAFLHSARPDPIIHRDLKPANILLDRNLSSKVGDVGLSTALLHHSGAGGGGGQQQSTMVRNTTPVGTFCYIDPEYQRTGAVSAKSDVYALGVVVLQLLTGRTSPLGLAHAVETALEEDGGDSFAEMLDATAGQWPPKEARELAALALRCAEMRRRDRPGLREHILPALERIKDVAARAARETKALLVRTASSAAAPGHFLCPILQEIMEDPCVAADGYTYDRKAIETWVSMKDKSPMTNLRLPSKSLIPNHSLRSAIMDWSSKNR
Length757
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.402
Instability index53.06
Isoelectric point6.70
Molecular weight82843.50
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24397
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.46|      16|      92|     136|     151|       1
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  136-  151 (29.23/17.37)	SSPSSRSLSSAPSECA
  229-  244 (28.23/16.53)	SSPDIPDLQAAVSEIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.68|      33|      38|     631|     668|       4
---------------------------------------------------------------------------
  631-  668 (49.58/39.76)	ARELAALALRCAemRRRDRPGlreHIL.PALERI.KD..VAA
  671-  707 (44.10/23.26)	ARETKALLVRTA..SSAAAPG...HFLcPILQEImEDpcVAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.49|      50|     352|     153|     206|       6
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  153-  206 (77.87/45.22)	RNGAAAVLFRQSSLSSQ.HDHALANINRRASPSGSGGSEisyhADTTLMANSHSI
  507-  557 (80.61/38.98)	RDLKPANILLDRNLSSKvGDVGLSTALLHHSGAGGGGGQ....QQSTMVRNTTPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.34|      23|      34|     253|     275|       8
---------------------------------------------------------------------------
  253-  275 (37.87/29.65)	QDDLKLQIESMKVKLRHLQMLHE
  289-  311 (37.48/29.27)	HNNLGIQRVEHEIKLREIDLTEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24397 with Med32 domain of Kingdom Viridiplantae
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