<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24366

Description Uncharacterized protein
SequenceMGQGGSVTVGGPVSSSSAIAVPNAPSFHASNPTSPLSAMNTIGSPTQSGIDQPVGANVSPMKAAEFSTLGQPGTTSRGDQSHRGAQVSYLHHLSCRIILAGLESNLKPATHAVIFHHMVNWLVNWDQRPHGVDEADTVQTSRIGRPVHEWMHLCLDVIWILVDEEKCRIPFYELVRSNLQFLENIPDDDAVICIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQTSTPGAVFSPDMIGEAVADRTIELLKLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNGDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMVLLSGLSINLCLKLAYQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLTVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGRRTNFSKPHASTQAGGNSNADAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSGGLGQNSGLPTSPSGAGAESAGASRGNTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFVHHAVMYEGQGGPVQSTSKPKVEILTLCGKLLDLLRPDVQHLLSHLKTDPTSSIYAATHPKLAQQHPS
Length1456
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.08
Grand average of hydropathy-0.052
Instability index43.22
Isoelectric point7.34
Molecular weight162720.49
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24366
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     482.94|     222|     347|     121|     396|       1
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  121-  267 (130.29/146.88)	...................................................................................................................................................................................................WLVNWDQRPHgvDEADTVQTsriGRPVHEW...............MHL...CLDVIWILvdeekcripfyelvrsnlQFLENIPDDDAVICIIMEIHRRRDMVCMHMQMLDQhlhcpTFGTHR............................FLSQSYPSIAG.ESvaNLRYSPITyPSVLGEPlHGEDLANSIP
  268-  396 (112.36/110.91)	KGGLDWeRALRCLRHALRttpspdwwrrvllvaPCYRSHSQTStpGAVFSPDMIGEAVADRTIE..LLKLtnSETQCWQDWLLFADifFFLMKS...GCIDFLDFVDKL...ASRVTNGDQQILRSNHVTWL...LAQII.........................................................................................................................................................................................................................................................
  452-  613 (131.61/76.16)	............................................................................................................................................rieivmntlssdprkvettrkiisfhkedksldpnnispqsilldfisssqtlriWSFNTSIREH..LNSDQLQK...GKQIDEWwkqmtkasgermidfMNLderAMGMFWVL..................SFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNER.....VTMMHEtyplsmvllsglsinlclklayqleetiFLGQAVPSIAMvET..YVRLLLIT.PHSLFRP.HFTTLTQRSP
  618-  735 (108.69/57.55)	KSGVSL.LLLEILNYRLL...............PLYRYHGKSK..ALMYDVTKIISMIKGKRGEhrLFRL..AENLCMNLILSLRD..FFLVKKelkGPTEFTETLNRItiiSLAITIKTRGIAEVEHMVYLqplLEQIM.........................................................................................................................................................................................................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.44|      14|     182|    1231|    1244|       2
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 1231- 1244 (29.13/15.84)	CGFLLAQLPPEF.HM
 1416- 1430 (22.32/10.46)	CGKLLDLLRPDVqHL
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      15|      15|    1035|    1049|       4
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 1035- 1049 (27.11/15.02)	LGVSTKT..PFSESFAQ
 1051- 1067 (24.58/12.95)	LGSSNSSicPPPEYFAN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.92|      14|      19|     988|    1006|       5
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  988- 1002 (18.52/ 8.83)	TDIADrVLAFYSTFL
 1010- 1023 (25.40/17.04)	TFVRD.ILAYFYGHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.54|      20|      23|    1331|    1350|      11
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 1323- 1348 (28.94/16.78)	RPvtsvamLRIAFRILGPLLPRLAFA
 1349- 1373 (28.60/16.49)	RP.lfmktLALLFNVLGDVFGKNSQA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.14|      18|     352|     428|     446|      13
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  408-  425 (29.62/17.10)	DPRKVETTRKIISFHKED
  429-  446 (29.52/15.93)	DPNNISPQSILLDFISSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.04|      15|      15|     815|     829|      14
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  815-  829 (29.61/20.08)	AWMLMNGHPEINSAN
  831-  845 (25.43/16.10)	ARVLREFSPEEVTAN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.15|      14|      16|     886|     900|      15
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  886-  900 (17.49/16.08)	ELVPLDIVlLALIDR
  903-  916 (22.66/15.29)	DPYALRLV.ISLLER
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24366 with Med23 domain of Kingdom Viridiplantae
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