<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24365

Description Uncharacterized protein
SequenceAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLTVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGRRTNFSKPHASTQAGGNSNADAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSGGLGQNSGLPTSPSGAGAESAGASRGNTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFVHHAVMYEGQGGPVQSTSKPKVEILTLCGKLLDLLRPDVQHLLSHLKTDPTSSIYAATHPKLAQQHPS
Length878
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.08
Grand average of hydropathy0.021
Instability index41.83
Isoelectric point9.07
Molecular weight97716.80
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24365
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.86|      20|      20|     464|     483|       1
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  464-  483 (37.85/24.38)	PFSESFAQYLGSSNSSICPP
  485-  501 (23.24/12.03)	...EYFANLLLGLVNNVIPP
  519-  533 (19.77/ 9.09)	NFSKPHASTQAGGNS.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     325.59|      96|     335|     356|     458|       2
---------------------------------------------------------------------------
  293-  351 (40.65/19.91)	............LSKAITNlaFF...VWTHE.............LVPL..DIV..LLALIdrdddPYAL.RLVISllERPELQHRIKAFCSS.......................................
  356-  458 (154.74/129.94)	HWLKNQPPKRAELQKALGN..HL...SWKDR.............YPPFFDDIAARLLPVI.....PLIIYRLIEN..DATDIADRVLAFYSTflAFHPL..RFTFVRDIlayFYGHLpsKLIVRIL.NVLG
  680-  790 (130.20/89.78)	RWLSDSSRPVKELNSAVGY..ALldpTWASQdststaignivalLHSFFSNLPQEWLESS.....HTVIKHL..R..PVTSVAMLRIAFR....ILGPLlpRLAFARPL...FMKTL..ALLFNVLgDVFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.21|      28|     438|     195|     223|       4
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  195-  223 (44.53/36.33)	QQAETTVINQCNQLLSpSAEPNYVMTYLS
  643-  670 (50.68/35.57)	QQLSVLMIQACGFLLA.QLPPEFHMQLYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.98|      30|     562|     260|     290|       6
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  260-  290 (48.22/44.69)	SPEEVTANIYTMVDVLLHHIQLELQRGHlVQ
  796-  825 (55.75/46.28)	SPHVPASEIGDIIDFVHHAVMYEGQGGP.VQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24365 with Med23 domain of Kingdom Viridiplantae
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