<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24362

Description Uncharacterized protein
SequenceCHTIAETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNGDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACDAVMTWFTSAGGAEFMQGPNMQPNERVTMMHETYPLSMVLLSGLSINLCLKLAYQLEETIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMVYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLTVRADKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHSFPQHRRYLCAGAWMLMNGHPEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHLVQDLLSKAITNLAFFVWTHELVPLDIVLLALIDRDDDPYALRLVISLLERPELQHRIKAFCSSRSPEHWLKNQPPKRAELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGRRTNFSKPHASTQAGGNSNADAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSGGLGQNSGLPTSPSGAGAESAGASRGNTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFVHHAVMYEGQGGPVQSTSKPKVEILTLCGKLLDLLRPDVQHLLSHLKTDPTSSIYAATHPKLAQQHPS
Length1123
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.09
Grand average of hydropathy-0.006
Instability index40.22
Isoelectric point8.36
Molecular weight125994.14
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24362
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.58|      16|      39|     211|     227|       1
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  211-  227 (23.56/20.69)	MHETYpLSMVLLSGLSI
  252-  267 (28.02/18.28)	MVETY.VRLLLITPHSL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.70|      15|      15|     702|     716|       2
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  702-  716 (27.11/17.13)	LGVSTKT..PFSESFAQ
  718-  734 (24.58/14.75)	LGSSNSSicPPPEYFAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     397.26|     136|     348|       4|     169|       4
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    4-  169 (189.76/162.57)	IAETQCWQDWLLFADifFFLMK...SGCIDFLDFVDK...LASRVTNGDQQILRSNHVTWLlaQIIrIEIVMNTlSSDPRKVETTRK....IISF..HKEDKS.....................LDPnNISPQSIlLDFISSSqtlriwsFNTSiREHLNSDqlqkgkqideWWKQMtkaSGERMIDFMNLdERAMGMF
  336-  504 (207.50/110.59)	LAENLCMNLILSLRD..FFLVKkelKGPTEFTETLNRitiISLAITIKTRGIAEVEHMVYL..QPL.LEQIMAT.SQHTWSEKTLRYfpplIRDFltVRADKRgqaiqawqqaettvinqcnqlLSP.SAEPNYV.MTYLSHS.......FPQH.RRYLCAG..........AWMLM...NGHPEINSANL.ARVLREF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.92|      14|      19|     655|     673|       6
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  655-  669 (18.52/ 8.91)	TDIADrVLAFYSTFL
  677-  690 (25.40/17.16)	TFVRD.ILAYFYGHL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.44|      14|     183|     898|     911|       7
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  898-  911 (29.13/15.32)	CGFLLAQLPPEF.HM
 1083- 1097 (22.32/10.17)	CGKLLDLLRPDVqHL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.47|      45|     449|     505|     557|       9
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  505-  557 (66.09/72.84)	SPEEVTANIYTmvdvLLHHI.....QLELQRGHLVQDLL....SKAITNLAFFVwtheLVPL
  955- 1008 (66.38/48.84)	STSTAIGNIVA....LLHSFfsnlpQEWLESSHTVIKHLrpvtSVAMLRIAFRI....LGPL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.73|      27|     322|     590|     623|      11
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  590-  623 (42.04/45.19)	IKAfCssrspeHWLKNQPPKRAELQKALGNHL...SW
  921-  950 (45.68/28.66)	IKD.C......RWLSDSSRPVKELNSAVGYALldpTW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24362 with Med23 domain of Kingdom Viridiplantae
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