<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24359

Description Uncharacterized protein
SequenceLFCECSYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLGSSNSSICPPPEYFANLLLGLVNNVIPPLSSKSKSNPADASGRRTNFSKPHASTQAGGNSNADAQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQLIAHVQAMLIQSNTGQGMSGGLGQNSGLPTSPSGAGAESAGASRGNTSASGISANFVSRSGYSCQQLSVLMIQACGFLLAQLPPEFHMQLYSEAARIIKDCRWLSDSSRPVKELNSAVGYALLDPTWASQDSTSTAIGNIVALLHSFFSNLPQEWLESSHTVIKHLRPVTSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVPASEIGDIIDFVHHAVMYEGQGGPVQSTSKPKVEILTLCGKLLDLLRPDVQHLLSHLKTDPTSSIYAATHPKLAQQHPS
Length503
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.08
Grand average of hydropathy0.110
Instability index44.99
Isoelectric point7.79
Molecular weight54349.59
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24359
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.90|      27|      57|      88|     114|       1
---------------------------------------------------------------------------
   88-  114 (50.18/26.32)	TPFSESFAQYLGSSNSSICPPPEYFAN
  143-  169 (47.73/24.73)	TNFSKPHASTQAGGNSNADAQRAFYQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.36|      54|     184|     225|     291|       3
---------------------------------------------------------------------------
  225-  291 (86.01/78.03)	LGQNSglPTSPSGAGAEsagasrgntsaSGISANFVSRS......GYSCQQLS...VLMIQACGFLLAQLPPEF.HM
  414-  477 (81.34/49.34)	FGKNS..QASPHVPASE...........IGDIIDFVHHAvmyegqGGPVQSTSkpkVEILTLCGKLLDLLRPDVqHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.28|      16|      23|     370|     386|       5
---------------------------------------------------------------------------
  370-  386 (23.33/17.87)	RPVTsVAMLRIAFRILG
  396-  411 (27.95/16.71)	RPLF.MKTLALLFNVLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.78|      16|      20|      41|      60|       6
---------------------------------------------------------------------------
   41-   60 (19.50/23.31)	VLAFYSTFLafhPLRFtFVR
   62-   77 (29.28/16.94)	ILAYFYGHL...PSKL.IVR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24359 with Med23 domain of Kingdom Viridiplantae
Unable to open file!