<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24306

Description Uncharacterized protein
SequenceLSSKQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPIGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGAPMPPPSYTYQPTSVPPGSQPWGTAPGQGAPLVSPMVQPGHQSLSASVPPVSSTEPSSADWQEHSSGDGKKYYYNKRTKQSSWEKPAELMTPLERADASTEWKEFTTAEGRKYYYNKVTKQSKWSIPDELRIARELAEKTSNQQPAREIESTTVAPVGSTSVSVETSLPATQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGDISSSSSMQNGGTSAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFFTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKERMREEEKVMRRKRKTVKREKRRKRRRRKRRRKIAKKKKETERRKEKRKKEKTGQGEMKWILMMMWKFMPRKIRNERRIKKRSIKGATMTPQILKGMRRMNRGNLEGIAVIARNLGSTPMLQTQIVKTGIEDTKRIEIVPAKMVGTRSLKTVNLEKMGRSI
Length981
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.959
Instability index59.58
Isoelectric point9.50
Molecular weight112042.16
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24306
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     221.79|      37|      38|     178|     214|       1
---------------------------------------------------------------------------
   76-   99 (27.94/11.44)	.....PHS...GH......VPPASQ.AVPmPYQAArPMS
  127-  153 (47.36/24.96)	SYTYQPTSVPPGSQ..........PWGTA.PGQGA.PLV
  154-  177 (33.43/15.26)	SPMVQP.....GHQSLSASVPPVSSTE.P.S........
  178-  214 (65.66/37.70)	SADWQEHSSGDGKKYYYNKRTKQSSWEKP.AELMT.PLE
  219-  250 (47.41/25.00)	STEWKEFTTAEGRKYYYNKVTKQSKWSIP.DEL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.78|      25|      25|     820|     844|       2
---------------------------------------------------------------------------
  820-  844 (42.27/21.92)	KERMREEE.......KVMRRKRKTVKR.EKRRK
  846-  870 (33.16/15.67)	RRRKR.RR.......KIAKKKKETERRkEKRKK
  872-  900 (30.34/13.73)	KTGQGEMKwilmmmwKFM..PRK.IRN.ERRIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     389.27|      66|      66|     488|     553|       3
---------------------------------------------------------------------------
  422-  479 (77.11/39.44)	.FKSLL.E.SAN..VQSDWSW..DQAMRVIISDKRYGALKT......LGERKQAFNEYL...NQ..R...KKIEVEE...R.R
  488-  553 (110.21/59.22)	DFFTMLEE.CKD..LTSSLRW..SKAITMFGHDERFNAVER......PKEREDLFENYLVELQK..K...EKAKAAEEHKR.R
  556-  616 (86.00/44.75)	EYREFLES.CDF..IKANTQW..RKVQDRLEDDERYARLEK.......IDRLDVFQDYIRHLEK..E...E.....EEQKRiR
  630-  703 (63.10/31.07)	EFRKMMEEhVADgtLNAKTYW..RDYCSQIKDSRAYLAVASnlsgsmPKE...LFDDVMEELDK..QyqdDRALIKDEVKS..
  763-  819 (52.84/24.93)	NFLDLLYS.IKE..ITAASTWddSKS..LFDDTQEYRDLGG......ETYAKELFEEYIARLKErlK...E............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     100.64|      25|      25|     265|     289|       4
---------------------------------------------------------------------------
  265-  285 (27.04/14.08)	................PAREI....ESTTVAPV....G.....STSVSVE
  286-  327 (24.96/12.39)	TSLPatqssslvgtiaPSSHD....AIANLPPP....GagpsyNGDISSS
  328-  354 (18.39/ 7.06)	SSM..................qnggTSAVVAPVttstG.....DPSVASD
  357-  383 (30.24/16.67)	TNRS..........tyGSSSV....PSTTDTKV....G.....ASAEDLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.93|      23|      61|      40|      62|       5
---------------------------------------------------------------------------
   14-   33 (31.54/10.19)	.STAPQN...MGQPMPmQWPPGPP
   40-   62 (49.80/19.48)	MQPAPQQYRPIGQAMP.GVNMGMP
  103-  124 (41.59/15.30)	MQPQQQAVFP.GGLMP.TMGAPMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      51.85|      16|      26|     940|     955|       6
---------------------------------------------------------------------------
  901-  920 (20.64/11.31)	KR............sikgaTMTPQILK..GMRRM
  921-  953 (15.93/ 6.99)	NRgnlegiaviarnlgstpMLQTQIVKT.GIEDT
  954-  977 (15.28/ 6.40)	KR..........ieivpakMVGTRSLKTvNLEKM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24306 with Med35 domain of Kingdom Viridiplantae
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