<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24303

Description Uncharacterized protein
SequenceMASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPIGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGAPMPPPSYTYQPTSVPPGSQPWGTAPGQGAPLVSPMVQPGHQSLSASVPPVSSTEPSSADWQEHSSGDGKKYYYNKRTKQSSWEKPAELMTPLERADASTEWKEFTTAEGRKYYYNKVTKQSKWSIPDELRIARELAEKTSNQQPAREIESTTVAPVGSTSVSVETSLPATQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGDISSSSSMQNGGTSAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFFTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKE
Length828
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.898
Instability index54.41
Isoelectric point5.72
Molecular weight93373.65
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24303
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.47|      39|      39|     185|     223|       1
---------------------------------------------------------------------------
  119-  151 (43.85/16.20)	P...GGLMPTM..............gapmpppSYTYQPTSVPPGSQ..........PWGT
  153-  212 (53.64/21.30)	PgqgAPLVSPMvqpgHQSlsasvppvsstepsSADWQEHSSGDGKKYYYNKRTKQSSWEK
  213-  253 (62.98/26.15)	P...AELMTPL....ERA............daSTEWKEFTTAEGRKYYYNKVTKQSKWSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     421.79|      65|      65|     496|     560|       2
---------------------------------------------------------------------------
  429-  477 (59.97/33.76)	...........................FKSLL..E.SAN..VQ.......SDWSWDQAMRVIISDKRYGALKT......LGERKQAFNEYL....NQR
  478-  548 (87.74/52.66)	KKIEVEE...R.R.....vkqrkarddFFTMLE.E.CKD..LT.......SSLRWSKAITMFGHDERFNAVER......PKEREDLFENYLVEL.QKK
  549-  615 (92.28/55.75)	EKAKAAEEHKR.R...........iaeYREFLE.S.CDF..IK.......ANTQWRKVQDRLEDDERYARLEK.......IDRLDVFQDYIRHL.EKE
  616-  696 (59.11/33.18)	E.....EEQKRiRkeqlrrqerknrdeFRKMME.EhVADgtLN.......AKTYWRDYCSQIKDSRAYLAVASnlsgsmPKE...LFDDVMEEL.DKQ
  700-  757 (55.64/30.82)	DRALIKDEVK.................................sgkipmlASWTLEDFQAAVTEDEKYKGV.S......NINIKLIYEDQIERLkEKD
  758-  823 (67.05/38.58)	....LKEAKKR.Q.........rlgdnFLDLL.yS.IKE..IT.......AASTWDDSKSLFDDTQEYRDLGG......ETYAKELFEEYIARL.KER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     181.24|      22|      26|       5|      26|       3
---------------------------------------------------------------------------
    4-   24 (44.52/14.49)	.NMQTPGPPQ.PPRPPMMGSTAP
   25-   44 (39.85/12.39)	QNMGQPMPMQwPPGPPQQ...PP
   45-   62 (34.98/10.20)	QFMQ.PA.PQ.QYRP..IGQAMP
   74-   90 (30.93/ 8.38)	.HFQQPG.....PHMPHSGHVPP
   91-  109 (30.97/ 8.40)	ASQAVPMPYQ.AARP.M..SSAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.01|      39|      40|     283|     322|       4
---------------------------------------------------------------------------
  283-  320 (57.73/37.03)	.....PVGSTSVSVETSLPATQSSSLVGTIAPSSHD.AIANLPP
  322-  362 (48.69/32.32)	G..agPSYNGDISSSSSMQNGGTSAVVAPVTTSTGDpSVAS.DA
  363-  397 (38.58/18.86)	GtnrsTYGSSSV......PST.TDTKVGASAEDLEE.AKKTMP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      15|     141|     263|     277|       5
---------------------------------------------------------------------------
  263-  277 (25.85/15.37)	LAEKTSNQQP...AREIE
  407-  424 (20.02/10.16)	LEDKTSEEEPvvyATKLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24303 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELRIARELAEKTSNQQPAREIESTTVAPVGSTSVSVETSLPATQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGDISSSSSMQNGGTSAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVY
2) MASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPIGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGAPMPPPSYTYQPTSVPPGSQPWGTAPGQGAPLVSPMVQPGHQSLSASVPPVSSTEPSSADWQEHSSGDGKKYYYNKRT
253
1
419
205










Molecular Recognition Features






MoRF SequenceStartStop




NANANA