<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24301

Description Uncharacterized protein
SequenceRYYYNKRTKQSSWEKPAELMTPLERADASTEWKEFTTAEGRKYYYNKVTKQSKWSIPDELRIARELAEKTSNQQPAREIESTTVAPVGSTSVSVETSLPATQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGDISSSSSMQNGGTSAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFFTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKERMREEEKV
Length639
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.08
Grand average of hydropathy-0.965
Instability index46.63
Isoelectric point5.47
Molecular weight73769.49
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24301
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     385.32|      65|      65|     299|     363|       1
---------------------------------------------------------------------------
  232-  295 (79.41/49.37)	...............FKSLL.E.SAN..VQSDWSWDQAMRVIISDKRYGALKT......LGERKQAFNEYLNQRKK..I...EvEERRVKQRKA
  296-  362 (100.83/64.83)	R............ddFFTMLEE.CKD..LTSSLRWSKAITMFGHDERFNAVER......PKEREDLFENYLVELQK..K...E.KAKAAEEHKR
  363-  424 (84.40/52.97)	R...........iaeYREFLES.CDF..IKANTQWRKVQDRLEDDERYARLEK.......IDRLDVFQDYIRHLEK..E...E......EEQKR
  426-  510 (50.47/28.48)	RkeqlrrqerknrdeFRKMMEEhVADgtLNAKTYWRDYCSQIKDSRAYLAVASnlsgsmPKE...LFDDVMEELDK..QyqdD.RALIKDE...
  576-  638 (70.21/42.73)	.................DLLYS.IKE..ITAASTWDDSKSLFDDTQEYRDLGG......ETYAKELFEEYIARLKErlK...E.KERMREEEK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.52|      27|      40|       1|      39|       2
---------------------------------------------------------------------------
    1-   27 (53.28/43.89)	RYYYNKRTKQSSWEKPAELMTPLERAD
   42-   68 (51.24/21.67)	KYYYNKVTKQSKWSIPDELRIARELAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.58|      38|      40|      92|     130|       3
---------------------------------------------------------------------------
   92-  129 (52.38/36.19)	....VSVE..TSLPATQSSSLVGTIAPSSHD.AIANLPPpGAGPS
  130-  170 (47.53/27.66)	YngdISSS..SSMQNGGTSAVVAPVTTSTGDpSVAS.DA.GTNRS
  172-  203 (37.66/20.58)	Y.......gsSSVPST.TDTKVGASAEDLEE.AKKTMPT..AG..
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24301 with Med35 domain of Kingdom Viridiplantae
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