<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24297

Description Uncharacterized protein
SequenceMASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPIGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGAPMPPPSYTYQPTSVPPGSQPWGTAPGQGAPLVSPMVQPGHQSLSASVPPVSSTEPSSADWQEHSSGDGKKYYYNKRTKQSSWEKPAELMTPLERADASTEWKEFTTAEGRKYYYNKVTKQSKWSIPDELRIARELAEKTSNQQPAREIESTTVAPVGSTSVSVETSLPATQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGDISSSSSMQNGGTSAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFFTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKVCCYLHH
Length631
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.849
Instability index60.27
Isoelectric point6.51
Molecular weight70097.87
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24297
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     133.97|      22|      26|       5|      26|       1
---------------------------------------------------------------------------
    4-   21 (37.98/11.32)	....NMQTPGPPQ.PPRPPMMGS
   22-   42 (34.80/ 9.84)	TAPQNMGQPMPMQwPPGPPQQ..
   43-   59 (29.94/ 7.57)	.PPQFMQ.PA.PQ.QYRP..IGQ
   88-  106 (31.24/ 8.18)	VPPASQAVPMPYQ.AARP.M..S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.21|      39|      39|     185|     223|       2
---------------------------------------------------------------------------
  120-  153 (38.38/15.48)	GGLMPTM..............gapmpppSYTYQPTSVPPGSQ..........PWGTaP
  157-  213 (61.13/28.64)	APLVSPMvqpgHQSlsasvppvsstepsSADWQEHSSGDGKKYYYNKRTKQSSWEK.P
  214-  254 (67.70/32.44)	AELMTPL....ERA............daSTEWKEFTTAEGRKYYYNKVTKQSKWSI.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     300.93|      64|      66|     414|     479|       3
---------------------------------------------------------------------------
  366-  412 (32.87/16.36)	.........................RSTY.GSSS.VPST...........TDTKVGAsAEDLEEAKKTMPTagkinvtPLEDKTS
  414-  479 (97.96/70.60)	EEPVVYATKleAKNA.........FKSLL.ESAN.VQSDWSWDQAMRVIISDKRYGA.LKTLGERKQAFNE.......YLNQRKK
  483-  547 (97.79/64.64)	EERRVKQRK..ARDD.........FFTMLeECKD.LTSSLRWSKAITMFGHDERFNA.VERPKEREDLFEN.......YLVELQK
  550-  614 (72.31/45.92)	K..........AKAAeehkrriaeYREFL.ESCDfIKANTQWRKVQDRLEDDERYAR.LEKI.DRLDVFQD.......YIRHLEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.80|      20|      23|     272|     291|       4
---------------------------------------------------------------------------
  272-  288 (24.71/12.67)	..............PAREIEST..TVAPVGSTS
  289-  312 (17.97/ 7.18)	VSV.......etslPATQSSSLvgTIAP..SSH
  313-  343 (22.13/10.57)	DAIanlpppgagpsYNGDISSS..SSMQNGGTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24297 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELRIARELAEKTSNQQPAREIESTTVAPVGSTSVSVETSLPATQSSSLVGTIAPSSHDAIANLPPPGAGPSYNGDISSSSSMQNGGTSAVVAPVTTSTGDPSVASDAGTNRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVY
2) MASNMQTPGPPQPPRPPMMGSTAPQNMGQPMPMQWPPGPPQQPPQFMQPAPQQYRPIGQAMPGVNMGMPGQMQHFQQPGPHMPHSGHVPPASQAVPMPYQAARPMSSAPMQPQQQAVFPGGLMPTMGAPMPPPSYTYQPTSVPPGSQPWGTAPGQGAPLVSPMVQPGHQSLSASVPPVSSTEPSSADWQEHSSGDGKKYYYNKRT
253
1
419
205










Molecular Recognition Features






MoRF SequenceStartStop




NANANA