<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24295

Description Uncharacterized protein
SequenceEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFFTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKERMREEEKV
Length446
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.09
Grand average of hydropathy-1.083
Instability index43.59
Isoelectric point5.59
Molecular weight53352.53
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24295
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     452.32|      65|      65|     106|     170|       1
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   39-  102 (77.32/33.96)	...............FKSLL.E.SAN..VQ....SDWSWDQAMRVIISDKRYGALKT......LGERKQAFNEYLNQRKK..I...EvEERRVKQRKA
  103-  169 (96.43/43.84)	R............ddFFTMLEE.CKD..LT....SSLRWSKAITMFGHDERFNAVER......PKEREDLFENYLVELQK..K...E.KAKAAEEHKR
  170-  231 (84.19/37.51)	R...........iaeYREFLES.CDF..IK....ANTQWRKVQDRLEDDERYARLEK.......IDRLDVFQDYIRHLEK..E...E......EEQKR
  233-  320 (59.56/24.77)	RkeqlrrqerknrdeFRKMMEEhVADgtLN....AKTYWRDYCSQIKDSRAYLAVASnlsgsmPKE...LFDDVMEELDK..QyqdD.RALIKDEVKS
  322-  373 (57.89/23.91)	K.............................ipmlASWTLEDFQAAVTEDEKYKGV.S......NINIKLIYEDQIERLKE..K...D.....LKEAKK
  374-  445 (76.93/33.76)	R........qrlgdnFLDLLYS.IKE..IT....AASTWDDSKSLFDDTQEYRDLGG......ETYAKELFEEYIARLKErlK...E.KERMREEEK.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24295 with Med35 domain of Kingdom Viridiplantae
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