<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24294

Description Uncharacterized protein
SequenceMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFFTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIAR
Length372
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.10
Grand average of hydropathy-1.088
Instability index43.82
Isoelectric point5.69
Molecular weight44832.00
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24294
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     310.69|      65|      65|      49|     113|       1
---------------------------------------------------------------------------
    7-   46 (39.14/19.35)	.............................DKRYGALKT......LGERKQAFNEYLNQRKKI...EvEERRVKQRKA.R
   49-  113 (108.65/67.52)	FFTMLEE.CKD..LTSSLRWSKAITMFGHDERFNAVER......PKEREDLFENYLVELQKK...E.KAKAAEEHKR.R
  117-  176 (93.47/57.00)	YREFLES.CDF..IKANTQWRKVQDRLEDDERYARLEK.......IDRLDVFQDYIRHLEKE...E......EEQKRiR
  191-  262 (69.42/40.33)	FRKMMEEhVADgtLNAKTYWRDYCSQIKDSRAYLAVASnlsgsmPKE...LFDDVMEELDKQyqdD.RALIKDEVK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.45|      39|      65|     265|     305|       2
---------------------------------------------------------------------------
  265-  305 (60.06/40.99)	KIPMLASWtlEDFQAAVTEDEKYKGV.SNINIKLIYEDQIER
  333-  372 (60.39/35.63)	EITAASTW..DDSKSLFDDTQEYRDLgGETYAKELFEEYIAR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24294 with Med35 domain of Kingdom Viridiplantae
Unable to open file!