<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24292

Description Uncharacterized protein
SequenceTNSRSTYGSSSVPSTTDTKVGASAEDLEEAKKTMPTAGKINVTPLEDKTSEEEPVVYATKLEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFFTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKERMREEE
Length472
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.09
Grand average of hydropathy-1.072
Instability index44.64
Isoelectric point5.42
Molecular weight55955.11
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24292
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     448.91|      65|      65|     134|     198|       1
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   67-  130 (77.38/34.08)	...............FKSLL.E.SAN..VQ....SDWSWDQAMRVIISDKRYGALKT......LGERKQAFNEYLNQRKK..I...EvEERRVKQRKA
  131-  197 (96.49/43.98)	R............ddFFTMLEE.CKD..LT....SSLRWSKAITMFGHDERFNAVER......PKEREDLFENYLVELQK..K...E.KAKAAEEHKR
  198-  259 (84.25/37.64)	R...........iaeYREFLES.CDF..IK....ANTQWRKVQDRLEDDERYARLEK.......IDRLDVFQDYIRHLEK..E...E......EEQKR
  261-  348 (59.66/24.90)	RkeqlrrqerknrdeFRKMMEEhVADgtLN....AKTYWRDYCSQIKDSRAYLAVASnlsgsmPKE...LFDDVMEELDK..QyqdD.RALIKDEVKS
  350-  401 (57.95/24.02)	K.............................ipmlASWTLEDFQAAVTEDEKYKGV.S......NINIKLIYEDQIERLKE..K...D.....LKEAKK
  402-  471 (73.17/31.90)	R........qrlgdnFLDLLYS.IKE..IT....AASTWDDSKSLFDDTQEYRDLGG......ETYAKELFEEYIARLKErlK...E.KERMREE...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24292 with Med35 domain of Kingdom Viridiplantae
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