<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24290

Description Uncharacterized protein
SequenceMGIYLLLVPCKTVEQVLWLPLLQRALEIHQLQVMQGQTEALMEVHLYLVLLTQKLEHLLKIWRRPKRQCQLQGRSMLLRWRIKQVKKNLLFMLLSWEAKNAFKSLLESANVQSDWSWDQAMRVIISDKRYGALKTLGERKQAFNEYLNQRKKIEVEERRVKQRKARDDFFTMLEECKDLTSSLRWSKAITMFGHDERFNAVERPKEREDLFENYLVELQKKEKAKAAEEHKRRIAEYREFLESCDFIKANTQWRKVQDRLEDDERYARLEKIDRLDVFQDYIRHLEKEEEEQKRIRKEQLRRQERKNRDEFRKMMEEHVADGTLNAKTYWRDYCSQIKDSRAYLAVASNLSGSMPKELFDDVMEELDKQYQDDRALIKDEVKSGKIPMLASWTLEDFQAAVTEDEKYKGVSNINIKLIYEDQIERLKEKDLKEAKKRQRLGDNFLDLLYSIKEITAASTWDDSKSLFDDTQEYRDLGGETYAKELFEEYIARLKERLKEKERMREEEKVMLLFCRIIYHLVLL
Length523
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.09
Grand average of hydropathy-0.792
Instability index43.51
Isoelectric point8.23
Molecular weight63076.78
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24290
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     456.76|      65|      65|     169|     233|       1
---------------------------------------------------------------------------
  102-  159 (75.29/37.46)	.FKSLLE.SAN..VQSDWSWDQAMRVIISDKRYGALKT......LGERKQAFNEYL...NQ..R...KKIEVEE...R.R
  169-  233 (102.22/53.29)	FFTMLEE.CKD..LTSSLRWSKAITMFGHDERFNAVER......PKEREDLFENYLVELQK..K...EKAKAAEEHKR.R
  237-  296 (86.03/43.78)	YREFLES.CDF..IKANTQWRKVQDRLEDDERYARLEK.......IDRLDVFQDYIRHLEK..E...E.....EEQKRiR
  311-  385 (63.85/30.74)	FRKMMEEhVADgtLNAKTYWRDYCSQIKDSRAYLAVASnlsgsmPKE...LFDDVMEELDK..QyqdDRALIKDEVKSgK
  390-  437 (50.55/22.92)	...............ASWTLEDFQAAVTEDEKYKGV.S......NINIKLIYEDQIERLKE........KDLKEAKKR..
  444-  508 (78.80/39.53)	FLDLLYS.IKE..ITAASTWDDSKSLFDDTQEYRDLGG......ETYAKELFEEYIARLKErlK...EKERMREEEK...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.34|      14|      15|      67|      80|       2
---------------------------------------------------------------------------
   67-   80 (27.43/19.24)	RQCQLQGRSMLLRW
   83-   96 (24.91/16.80)	KQVKKNLLFMLLSW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24290 with Med35 domain of Kingdom Viridiplantae
Unable to open file!