<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24287

Description Uncharacterized protein
SequenceMASSISSVSSTSNGSEHAVAAKGGDLLADADSAACRQSDLPLNNDIAGSKVVSKRSRSEITEVSSHAGKEVRENMQGTNGQGGCSWGWGEEGVVMDIDILLSEFGDFSDFFQEDELDFGEPPGTAESHALVTPASEYGDMPFIDSPSVAMDIPEQRLSPVGFTSMEAFNHQTMSPIQDVASKVQEPLKEIASPAGSQSLVLSSSRSDFLTRAEATLTFAPEYAAVEISSCETPAALFTNPYLPRSKKRGSCGFSSRVYSYDVTQSSKVESARDKSEKSDKLTPANLSRDVGRSSLYTLVQGRKNESEKSLNNADEQSCKGETSRPVSGETSFSSSLTMQKKSDNMLNVGYFLLSMKTALATEIECITFQAAMCRIRHTLVSLRTKASAELKSAMQTESSSNSDLVPKYDMKRKESIPARLSSDADHEMYDRSRLENVGVWRSVVVPKGAKPLDSLSAKTFSGTSPSVQRQPIVELLSAMALLVQQSTSFVDIALDMDDGDGSFFWLSLDEQRRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSESSMIGLLQSDIKSALKTAFANMDGPLSVIDWCRGRSNIAESVAMGDAYSFHYTGDIRESSNSIPIGGDAMSPPQSSSDRGTSEEHHKGYHRVRPTIAVLPSPSLLVGYQDDWLKTSASCLKLWEKAPLEPYASAKPVTYYALCPDIDMLTSAATDFFMQLGTIYEVCKLGTHSPQHSGGQIEQSPGKYQPSGLVLVECPDQLKSSGSHSVSISSVTEYFQALSKSWSVKSFLSSLARIIKEIKLNLNISTNQKESSNIPCTVRPFTFSSFSTSLIQGTYKTIAAHVFFSLFALL
Length848
PositionKinase
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.289
Instability index56.39
Isoelectric point5.23
Molecular weight91649.71
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24287
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     282.48|      76|     193|     138|     213|       1
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  138-  213 (122.76/66.75)	G..DMPFIDSPSVAMDIP....EQRLSPVGF..TS.ME.AFNHQTMS.PIQDVASKVQEPLK....EIASPAG....SQSL.VLSSSRSDF.....LTRAE
  223-  304 (71.40/35.92)	AavEISSCETPAALFTNPylprSKKRGSCGF..SSrVY.SYDVTQSS.KVESARDKSEKSDKltpaNLSRDVG....RSSLyTLVQGRKN...........
  328-  414 (88.33/46.08)	G..ETSF..SSSLTMQKK....SDNMLNVGYflLS.MKtALATEIECiTFQAAMCRIRHTLV....SLRTKASaelkSAMQ.TESSSNSDLvpkydMKRKE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     208.36|      68|     193|     527|     618|       2
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   24-  110 (100.17/59.07)	GDLLADADSAACRQSDL..PLNNDIAGSKVVSKRSrseiTEVSShAGKEVRENMqgtngQGGCS...WGWGE....EGVVMdidillsefGDFSDF
  528-  604 (108.20/112.74)	GGLLGTCHSKDCAGVDLvdPLSAEVSESSMIGLLQ....SDIKS.ALKTAFANM.....DGPLSvidWCRGRsniaESVAM.........GDAYSF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24287 with Med13 domain of Kingdom Viridiplantae
Unable to open file!