<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24284

Description Uncharacterized protein
SequenceEQKDALNSTVLSAYLRLQNEGFLSTWTNSFVGPWDPSQGEHNPDEKIKLWLFLSGRHSSVPEMTQPAVAKLRVVSSGLWVAPGNSEEVAAALCQALRNSLERALRGLSYARFGDVFTKYNPPTRNQNSFRRAQPTVEFVFAATEEAIFVHVIISARYMRNLSSDDIEKVLTHTPRSVGEGLPVIVAPSGMLGRLVGCCPSDLARQVYSSKLSAPNLPGFTQPTICQLRGQSYYVEVALGFPPASTGKTSESENNQIKKELDSVNDPHLGADGQQKLESADGLPVLERTFIYPPEAVMVPMVHQAFVRFSSKRMWSQDCMGSSPCEAWPFWNFSPSSYFRNSSFFGSSRGLGVNSNFLRLRRQRNSNSNGMASSISSVSSTSNGSEHAVAAKGGDLLADADSAACRQSDLPLNNDIAGSKVVSKRSRSEITEVSSHAGKEVRENMQGTNGQGGCSWGWGEEGVVMDIDILLSEFGDFSDFFQEDELDFGEPPGTAESHALVTPASEYGDMPFIDSPSVAMDIPEQRLSPVGFTSMEAFNHQTMSPIQDVASKVQEPLKEIASPAGSQSLVLSSSRSDFLTRAEATLTFAPEYAAVEISSCETPAALFTNPYLPRSKKRGSCGFSSRVYSYDVTQSSKVESARDKSEKSDKLTPANLSRDVGRSSLYTLVQGRKNESEKSLNNADEQSCKGETSRPVSGETSFSSSLTMQKKSDNMLNVGYFLLSMKTALATEIECITFQAAMCRIRHTLVSLRTKASAELKSAMQTESSSNSDLVPKYDMKRKESIPARLSSDADHEMYDRSRLENVGVWRSVVVPKGAKPLDSLSAKTFSGTSPSVQRQPIVELLSAMALLVQQSTSFVDIALDMDDGDGSFFWLSLDEQRRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVKIWCSVFLAISTYPCIMSPCPFLDTGFRVIHDWLVAVGYKISS
Length964
PositionKinase
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.08
Grand average of hydropathy-0.308
Instability index53.33
Isoelectric point5.54
Molecular weight105146.96
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24284
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.93|      35|      98|     477|     512|       1
---------------------------------------------------------------------------
  457-  475 (19.17/ 6.18)	............WGEEGVVMDIDILL...SEFGD....
  477-  512 (59.76/40.26)	SDFFQEDE..LDFGEPPGTAESHALVTPASEYGDmPFI
  575-  611 (54.01/31.38)	SDFLTRAEatLTFAPEYAAVEISSCETPAALFTN.PYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.81|      28|      28|     619|     646|       2
---------------------------------------------------------------------------
  404-  428 (36.11/16.21)	..CRQSDLPLNNDIA.GS...KVVSKRSRSE
  618-  645 (47.23/23.15)	GSCGFSSRVYSYDVTQSS...KVESARDKSE
  646-  676 (37.47/17.06)	KSDKLTPANLSRDVGRSSlytLVQGRKNESE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     282.83|     110|     627|     161|     272|       3
---------------------------------------------------------------------------
   61-  216 (156.63/112.97)	PEMTQPAVAKLRVVSSGLWVAPGNSEEVAAALCQALRNSLERALRGLSYARFGdvfTKY...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................npptrnqnsfrraqptvefvfaateeaifvhviisarymrnLSSD.DIEKVLTHTPRSVGEGLPVIVaPSGM..LGRL.....VGCCPSdLARQVYSSKLSAPNL
  217-  272 (72.08/42.81)	PGFTQPTICQLRGQSYYVEVALGFPPASTGKTSESENNQIKKELDSVNDPHLG...ADG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  789-  850 (54.12/30.48)	...........................................................qqklesadglpvlertfiyppeavmvpmvhqafvrfsskrmwsqdcmgsspceawpfwnfspssyfrnssffgssrglgvnsnflrlrrqrnsnsngmassissvsstsngsehavaakggdlladadsaacrqsdlplnndiagskvvskrsrseitevsshagkevrenmqgtngqggcswgwgeegvvmdidillsefgdfsdffqedeldfgeppgtaeshalvtpaseygdmpfidspsvamdipeqrlspvgftsmeafnhqtmspiqdvaskvqeplkeiaspagsqslvlsssrsdfltraeatltfapeyaaveisscetpaalftnpylprskkrgscgfssrvysydvtqsskvesardkseksdkltpanlsrdvgrsslytlvqgrknesekslnnadeqsckgetsrpvsgetsfsssltmqkksdnmlnvgyfllsmktalateiecitfqaamcrirhtlvslrtkasaelksamqtesssnsdlvpkydmkrkesiparLSSDaDHEMYDRSRLENVGVWRSVVV.PKGAkpLDSLsaktfSGTSPS.VQRQPIVELLSAMAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.14|      15|      22|     331|     352|       5
---------------------------------------------------------------------------
  331-  345 (29.00/28.07)	NFSPSSYFRNSSFFG
  355-  369 (27.14/ 9.28)	NFLRLRRQRNSNSNG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24284 with Med13 domain of Kingdom Viridiplantae
Unable to open file!