<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24280

Description Uncharacterized protein
SequenceMRNLSSDDIEKVLTHTPRSVGEGLPVIVAPSGMLGRLVGCCPSDLARQVYSSKLSAPNLPGFTQPTICQLRGQSYYVEVALGFPPASTGKTSESENNQIKKELDSVNDPHLGADGQQKLESADGLPVLERTFIYPPEAVMVPMVHQAFVRFSSKRMWSQDCMGSSPCEAWPFWNFSPSSYFRNSSFFGSSRGLGVNSNFLRLRRQRNSNSNGMASSISSVSSTSNGSEHAVAAKGGDLLADADSAACRQSDLPLNNDIAGSKVVSKRSRSEITEVSSHAGKEVRENMQGTNGQGGCSWGWGEEGVVMDIDILLSEFGDFSDFFQEDELDFGEPPGTAESHALVTPASEYGDMPFIDSPSVAMDIPEQRLSPVGFTSMEAFNHQTMSPIQDVASKVQEPLKEIASPAGSQSLVLSSSRSDFLTRAEATLTFAPEYAAVEISSCETPAALFTNPYLPRSKKRGSCGFSSRVYSYDVTQSSKVESARDKSEKSDKLTPANLSRDVGRSSLYTLVQGRKNESEKSLNNADEQSCKGETSRPVSGETSFSSSLTMQKKSDNMLNVGYFLLSMKTALATEIECITFQAAMCRIRHTLVSLRTKASAELKSAMQTESSSNSDLVPKYDMKRKESIPARLSSDADHEMYDRSRLENVGVWRSVVVPKGAKPLDSLSAKTFSGTSPSVQRQPIVELLSAMALLVQQSTSFVDIALDMDDGDGSFFWLSLDEQRRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSESSMIGLLQSDIKSALKTAFANMDGPLSVIDWCRGRSNIAESVAMGDAYSFHYTGDIRESSNSIPIGGDAMSPPQSSSDRDQCRHFRGAS
Length855
PositionKinase
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.382
Instability index57.12
Isoelectric point5.22
Molecular weight92473.29
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24280
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     596.53|     190|     220|     102|     303|       1
---------------------------------------------------------------------------
  102-  303 (307.90/219.41)	ELDsVNDPHLGADGQQKLESADGLPvlERTFIYPPEAVM.VPMVHQAFVRFSSKRMWSQDCMgsSPCEAWPFWNFSPSSYFrnSSFFGS.SRGLGVN.SNFLrlrrQRNSNSNGMASSISSVSSTSNGSEHAVAAkGGDLLADADSAACRQSDLPLNNDIA.GSKVVSKRSRSEITE..VSSHAGKEV.RENM....QGTNGQGGCSWGWGEE
  327-  527 (288.63/175.34)	ELD.FGEPPGTAESHALVTPASEYG..DMPFIDSPSVAMdIPEQRLSPVGFTSMEAFNHQTM..SPIQDVASKVQEPLKEI..ASPAGSqSLVLSSSrSDFL....TRAEATLTFAPEYAAVEISSCETPAALFT.NPYLPRSKKRGSCGFSSRVYSYDVTqSSKVESARDKSEKSDklTPANLSRDVgRSSLytlvQGRKNESEKSLNNADE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     209.07|      66|     211|     567|     638|       2
---------------------------------------------------------------------------
  567-  638 (95.76/70.13)	MKTALAtEIECITFQAAMCRIRHTLV.SLRTKASAELKSAMQTESSSNSdlVPkydMKRKESIPARLSSDADH
  781-  847 (113.31/64.86)	LKTAFA.NMDGPLSVIDWCRGRSNIAeSVAMGDAYSFHYTGDIRESSNS..IP...IGGDAMSPPQSSSDRDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.86|      27|     220|     528|     555|       3
---------------------------------------------------------------------------
  528-  555 (43.63/26.56)	QSCKG.ETSRPVSGETSFSSSLTMQkKSD
  749-  776 (42.23/21.58)	KDCAGvDLVDPLSAEVSESSMIGLL.QSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24280 with Med13 domain of Kingdom Viridiplantae
Unable to open file!