<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24273
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | LSSVVILESRLLHVSLFWLLWKEFYSFGIHKFLICPLFQVTYYALCPDIDMLTSAATDFFMQLGTIYEVCKLGTHSPQHSGGQIEQSPGKYQPSGLVLVECPDQLKSSGSHSVSISSVTEYFQALSKSWSVKSFLSSLARIIKEIKLNLNISTNQKESSNIPCTVVYVVCPFPEPSAVLQTLVESSVALGSILSSERERKSFLYAQVAKALNSSASADEASASNVVMLSGFSIPKLVLQIVTVETLLRLHKPNELAAFKDIAFTVYNKARRIPRFVSTSDMFQSPTYMSRSQSAMMHTASPGPTLWKECLAPRMSGQTLSRETEFDASMRSVSWDNSWQPGRAVGLPDPSKIPELCAQDDRKYAFEPLFILAEPGAVDYNDTMESSRFGVDASSSRVYSSISGGTDSGASPLLEGSENDSAMSLHCCYGWTEDWRWLVCIWTDSRGELLDSLIFPFGGISSRQDTTVLQSLFIQILQQGCQIMSSSPEASNMRSRDVVITRIGGFLELEIQEWQKAIYSFGGNEVKKWPVQLRRSIPDGIPSNSNGPTLEQQDMGLIQDRNMPSSPSTLYSPHPKSSFTKGQPGNKKQILAEQTGIEGSRGSLHLVRSISLVAVSQDSSLHLACQADLLATRPTSGEGNQSSSTGASSYLDGFAPVKSIGSMSASYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTATPLAMGYVVSKAVPPVRKQPTKEDSRHSVLSVSIVDYYGGTVQDKMSRGSKQAARHETSARDYVTDMHNVLEAVAAELHALSWMTVSPVYMERRSALPFHCDMVLRLRRLLHYADRHLSQPTDKGDVS |
Length | 833 |
Position | Kinase |
Organism | Aegilops tauschii subsp. strangulata (Goatgrass) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.166 |
Instability index | 64.90 |
Isoelectric point | 6.61 |
Molecular weight | 91469.97 |
Publications | PubMed=25035499
PubMed=29158546
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP24273
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 239.76| 102| 491| 21| 226| 1
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21- 80 (29.58/162.02) .................................................................................................WKE.........FYSF.GIHKflicplfqvtyyalCPDIDMLTSaatdFFMQLgtIYEVCKLGTHSPQHS
159- 226 (74.77/33.57) SNIP..CT...VVYVVCP...FPEPSAV.LQTLVESSvALGSILSSERerksfLYAQVAKALNSSASA.DEASASNVV.........................................................................................
350- 490 (135.42/66.77) SKIPelCAqddRKYAFEPlfiLAEPGAVdYNDTMESS.RFGVDASSSR.....VYSSISGGTDSGASPlLEGSENDSAmslhccygwtedwrwlvciWTDsrgelldslIFPFgGISS..............RQDTTVLQS....LFIQI..LQQGCQIMSSSPEAS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.93| 12| 15| 602| 613| 2
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602- 613 (19.65/11.50) SLHLVRSISLVA
619- 630 (21.28/13.03) SLHLACQADLLA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 37.34| 11| 15| 640| 650| 5
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640- 650 (18.53/ 9.21) QSSSTGASSYL
657- 667 (18.81/ 9.46) KSIGSMSASYL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 131.22| 29| 279| 280| 313| 6
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280- 308 (55.49/24.80) DMFQSPT..YMSRSQSAMMHTASPGPTLWKE
529- 552 (34.52/13.80) .....PV..QLRRSIPDGIPSNSNGPTLEQQ
561- 588 (41.22/15.55) NMPSSPStlYSPHPKSSFTK.GQPGNK..KQ
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