Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | SSFFGSSRGLGVNSNFLRLRRQRNSNSNGMASSISSVSSTSNGSEHAVAAKGGDLLADADSAACRQSDLPLNNDIAGSKVVSKRSRSEITEVSSHAGKEVRENMQGTNGQGGCSWGWGEEGVVMDIDILLSEFGDFSDFFQEDELDFGEPPGTAESHALVTPASEYGDMPFIDSPSVAMDIPEQRLSPVGFTSMEAFNHQTMSPIQDVASKVQEPLKEIASPAGSQSLVLSSSRSDFLTRAEATLTFAPEYAAVEISSCETPAALFTNPYLPRSKKRGSCGFSSRVYSYDVTQSSKVESARDKSEKSDKLTPANLSRDVGRSSLYTLVQGRKNESEKSLNNADEQSCKGETSRPVSGETSFSSSLTMQKKSDNMLNVGYFLLSMKTALATEIECITFQAAMCRIRHTLVSLRTKASAELKSAMQTESSSNSDLVPKYDMKRKESIPARLSSDADHEMYDRSRLENVGVWRSVVVPKGAKPLDSLSAKTFSGTSPSVQRQPIVELLSAMALLVQQSTSFVDIALDMDDGDGSFFWLSLDEQRRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSESSMIGLLQSDIKSALKTAFANMDGPLSVIDWCRGRSNIAESVAMGDAYSFHYTGDIRESSNSIPIGGDAMSPPQSSSDRGTSEEHHKGYHRVRPTIAVLPSPSLLVGYQDDWLKTSASCLKLWEKAPLEPYASAKPVTYYALCPDIDMLTSAATDFFMQLGTIYEVCKLGTHSPQHSGGQIEQSPGKYQPSGLVLVECPDQLKSSGSHSVSISSVTEYFQALSKSWSVKSFLSSLARIIKEIKLNLNISTNQKESSNIPCTVVYVVCPFPEPSAVLQTLVESSVALGSILSSERERKSFLYAQVAKALNSSASADEASASNVVMLSGFSIPKLVLQIVTVETLLRLHKPNELAAFKDIAFTVYNKARRIPRFVSTSDMFQSPTYMSRSQSAMMHTASPGPTLWKECLAPRMSGQTLSRETEFDASMRSVSWDNSWQPGRAVGLPDPSKIPELCAQDDRKYAFEPLFILAEPGAVDYNDTMESSRFGVDASSSRVYSSISGGTDSGASPLLEGSENDSAMSLHCCYGWTEDWRWLVCIWTDSRGELLDSLIFPFGGISSRQDTTVLQSLFIQILQQGCQIMSSSPEASNMRSRDVVITRIGGFLELEIQEWQKAIYSFGGNEVKKWPVQLRRSIPDGIPSNSNGPTLEQQDMGLIQDRNMPSSPSTLYSPHPKSSFTKGQPGNKKQILAEQTGIEGSRGSLHLVRSISLVAVSQDSSLHLACQADLLATRPTSGEGNQSSSTGASSYLDGFAPVKSIGSMSASYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTATPLAMGYVVSKAVPPVRKQPTKEDSRHSVLSVSIVDYYGGTVQDKMSRGSKQAARHETSARDYVTDMHNVLEAVAAELHALSWMTVSPVYMERRSALPFHCDMVLRLRRLLHYADRHLSQPTDKGDVS |
Length | 1513 |
Position | Kinase |
Organism | Aegilops tauschii subsp. strangulata (Goatgrass) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.306 |
Instability index | 62.45 |
Isoelectric point | 5.73 |
Molecular weight | 164305.93 |
Publications | PubMed=25035499 PubMed=29158546 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP24271 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 58.68| 19| 54| 293| 311| 1 --------------------------------------------------------------------------- 293- 311 (32.06/17.42) QSSKVESARDKSEK...SDKLT 345- 366 (26.63/13.15) QSCKGETSRPVSGEtsfSSSLT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 166.20| 52| 54| 124| 176| 2 --------------------------------------------------------------------------- 124- 176 (88.84/50.27) MDI.DILLSEFGdFSDF..FQEDELDFGEPPGTAESHALVTPASEYGDMPFIDSPS 179- 233 (77.35/39.36) MDIpEQRLSPVG.FTSMeaFNHQTMSPIQDVASKVQEPLKEIASPAGSQSLVLSSS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 174.51| 53| 55| 606| 659| 4 --------------------------------------------------------------------------- 606- 659 (90.29/53.06) DGPLSViDWCRGRSNIAESVAMGDAYSF..HYTGD.IRESSNSIPIGGDAMSPPQSS 661- 716 (84.22/45.48) DRGTSE.EHHKGYHRVRPTIAVLPSPSLlvGYQDDwLKTSASCLKLWEKAPLEPYAS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 508.95| 134| 347| 965| 1105| 5 --------------------------------------------------------------------------- 965- 1105 (223.70/134.84) PTYMSRSQSammhtASPGPTLWKECLAPRMSGQTLSRETEF..DASMRSVSWdnSWQPGRAV..GLPD..PSKIPELCAQD.....DRKYAFEPL...FIL..AEPGAVDYNDTMESSRFG......VDASSSRVYSSISGGTDSGASPLLEGSENDSAMSLH 1208- 1303 (105.09/51.21) ...................................................W..PVQLRRSIpdGIPS..NSNGPTLEQQDmgliqDRNMPSSPS...TLY..SPHPKSSFTKGQPGNKKQ......ILAEQTGIEGS.RGSLHLVRSISLVAVSQDSSLHLA 1313- 1453 (180.16/95.62) PTSGEGNQS.....SSTGASSYLDGFAPVKSIGSMSASYLLvpSPSMRYLS......PA.TL..QLPTclTSESPPLAHLL.....HSKGTATPLamgYVVskAVP.PVRKQPTKEDSRHSvlsvsiVDYYGGTVQDKMSRGSKQAARH..ETSARDYVTDMH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.51| 16| 55| 802| 817| 7 --------------------------------------------------------------------------- 790- 805 (25.46/15.42) SHSVSISSVTEYFQAL 806- 821 (26.06/15.99) SKSWSVKSFLSSLARI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 96.72| 29| 281| 556| 592| 14 --------------------------------------------------------------------------- 53- 81 (49.61/24.67) GDLLADADSAACRQSDL..PLNNDIAGSKVV 557- 587 (47.11/37.08) GGLLGTCHSKDCAGVDLvdPLSAEVSESSMI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 34.50| 10| 15| 837| 846| 18 --------------------------------------------------------------------------- 837- 846 (18.18/12.50) ESSNIPCTVV 854- 863 (16.32/10.30) EPSAVLQTLV --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FFGSSRGL 2) FFQEDELDF 3) SNFLRLRR | 3 139 14 | 10 147 21 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab