<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24253

Description Uncharacterized protein
SequenceRLETLRKVLPVSVPDELNELQEVARQFEDKIYTEATNQSDYVRKISLKMVSMETNRQQAHGNAQVIPNQNNSAPALPPQGRNQAQTTKRQSSQQPMMQMLSGLHPGQSTIPQTQPMAMQSATQSGTQQNQLNFVQQSVQSLLHQPQQTVGRQQQQAHPSIHQQPSLHSQQPNIPLQQQQQQLMGHQPNLQQDQLIGQHNGAVEMQEQQRLPVQSNILLNVQQTQQMLNQPYMLLHQTHQLGSQANMASLQHQQLLGTVPYMLLQQNNMDPIQAQRGLQEVSSSSHEDADADYWQEEIYQMVKMLKDQYFADLSELFNKICVKLQHVESIIPPPIPSEQYDRMKSFKTLLERILQMLQISKSIIQPAMRDRVPQYEKQIITILNCLRKAVQPQVQQ
Length395
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.751
Instability index66.17
Isoelectric point6.97
Molecular weight45291.87
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24253
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.18|      26|      26|     163|     188|       1
---------------------------------------------------------------------------
  100-  137 (31.03/ 7.11)	LSGLHPGQSTIPQTQpmamqsatqsgtQQNQLNFVQQS
  139-  159 (32.89/ 7.94)	QSLLHQPQQTVGRQQ............QQ....AH.PS
  163-  188 (52.27/16.58)	QPSLHSQQPNIPLQQ............QQQQLMGHQPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     117.31|      28|      28|     207|     234|       2
---------------------------------------------------------------------------
  207-  234 (49.26/25.13)	QQRLPVQSNILL..................NVQQTQQMLNQ.PYMLL
  237-  263 (40.74/19.47)	THQLGSQAN..M..................ASLQHQQLLGTvPYMLL
  266-  309 (27.31/10.56)	NNMDPIQAQRGLqevsssshedadadywqeEIYQMVKMLKD.QYF..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.88|      17|      19|      58|      74|       3
---------------------------------------------------------------------------
   58-   74 (30.25/17.59)	QAHGNAQVIPNQNNSAP
   79-   95 (29.63/17.06)	QGRNQAQTTKRQSSQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.55|      27|      32|     315|     346|       4
---------------------------------------------------------------------------
  315-  341 (50.20/37.68)	LFNKICVKLQHVESIIPPPIPS..EQYDR
  348-  376 (42.35/20.12)	LLERILQMLQISKSIIQPAMRDrvPQYEK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24253 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RKISLKMVSMETNRQQAHGNAQVIPNQNNSAPALPPQGRNQAQTTKRQSSQQPMMQMLSGLHPGQSTIPQTQPMAMQSATQSGTQQNQLNFVQQSVQSLLHQPQQTVGRQQQQAHPSIHQQPSLHSQQPNIPLQQQQQQLMGHQPNLQQDQLIGQHNGAVEMQEQQ
43
208










Molecular Recognition Features






MoRF SequenceStartStop




NANANA