<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24245

Description Uncharacterized protein
SequenceSNTSRWTCILQMSGSNQMASDGKFGKGPRELTGAVDLISRYRLLNHHSFFCKKPLPLAISDTHYLQNVVGDTEIRKGEGMEIDQLIQNPDPREKKTAYIKPFDMETLGHAFQLRETAPVDLPSAEKGTPTISGNSKVKSRDKVKKHKKHKAKDKDKEQKKHKHRHKDRSKDKDKDKEKEKEKEKEKEKEKEKDKDKDK
Length198
PositionHead
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-1.450
Instability index26.01
Isoelectric point9.57
Molecular weight22874.75
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24245
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.45|      15|      15|     166|     180|       1
---------------------------------------------------------------------------
  148-  162 (25.47/ 8.25)	KHKAKDKDKEQKKHK
  166-  180 (26.33/ 8.72)	KDRSKDKDKDKEKEK
  184-  198 (24.65/ 7.80)	KEKEKEKEKDKDKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.58|      46|      60|      28|      75|       2
---------------------------------------------------------------------------
   28-   75 (74.76/60.11)	PRELTGAvdLISRYRLLN.HHSFFCKKPLPLAI.SDTHYLQNVVGDTEIR
   91-  138 (68.82/48.66)	PREKKTA..YIKPFDMETlGHAFQLRETAPVDLpSAEKGTPTISGNSKVK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24245 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HAFQLRETAPVDLPSAEKGTPTISGNSKVKSRDKVKKHKKHKAKDKDKEQKKHKHRHKDRSKDKDKDKEKEKEKEKEKEKEKEKDKDKDK
109
198










Molecular Recognition Features






MoRF SequenceStartStop




1) RDKVKKHKKHKAKDKDKEQKKHKHRHKDRSKDKDKDKEKEKEKEKEKEKEKEKDKDKDK
140
198