<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24241

Description Uncharacterized protein
SequenceMIANACETAERVIAECRKTHGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVQVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQGGEPNAEPDAKPDAKPAAESDAEPELLPAEAAKPA
Length417
PositionHead
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-0.820
Instability index58.34
Isoelectric point7.10
Molecular weight44621.27
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24241
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.31|      22|      32|      78|     108|       1
---------------------------------------------------------------------------
   86-  107 (43.46/23.01)	AH.NFGDNSGAYPKNTPAFSPNN
  110-  132 (33.86/10.53)	AQgNPMQASGGQLLGRSAPSPGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.67|      15|      17|     385|     399|       2
---------------------------------------------------------------------------
  385-  399 (29.67/18.18)	EPNAEPDAKP..DAKPA
  401-  417 (23.01/12.62)	ESDAEPELLPaeAAKPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     159.17|      32|      37|     152|     184|       3
---------------------------------------------------------------------------
  152-  180 (51.84/15.34)	........PRSGTNMMNTPS.PQ.QHLTPQ.QQR.....QKL...MQA
  182-  225 (31.03/ 6.78)	QQQqqqlrP.SAAGMLAQSSvPQlQDLQGQaQQKvqvagQQQ...MQY
  324-  360 (39.91/ 8.10)	TDQmygmgGANTTSMMGMQM.QQ.QQ...Q.QQQ.....QGLygnMQG
  366-  383 (36.39/ 6.50)	QQQ..........GMV.........GLQNQ.QQN.....Q.M....QG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.86|      29|      48|     228|     259|       4
---------------------------------------------------------------------------
  228-  259 (48.69/26.09)	AQALSqfqNRQMQA...ARMQPGMSQSQLNQGNQL
  278-  309 (51.17/21.06)	AQASS...NSQMMAnipGTMQTMQSQSMMPQMQQF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24241 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVQVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQGGEPNAEPDAKPDAKPAAESDAEPELLPAEAAKPA
53
417










Molecular Recognition Features






MoRF SequenceStartStop




1) AEPDAKPDAKPAAESDAEPELLPAEAAKPA
2) QQQGLYGNMQ
388
350
417
359