<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24238

Description Uncharacterized protein
SequencePAMDAAAAPGAAAGGQQQQQPAPPRAERLNGEVQSQLNLEGMRARAVGLYKAISRILEDFDAIARVNPSGSPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIDMIANACETAERVIAECRKTHGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
Length593
PositionHead
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.753
Instability index57.60
Isoelectric point9.29
Molecular weight64518.83
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24238
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.59|      22|      22|     517|     538|       1
---------------------------------------------------------------------------
  486-  506 (33.24/ 8.52)	MYGMGGA.NTTSMMGMQMQQQQ
  517-  538 (45.68/15.06)	MQGGGQSLQQQGMVGLQNQQQN
  540-  561 (45.68/15.06)	MQGGGQSLQQQGMVGLQNQQQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.02|      25|      33|     266|     298|       2
---------------------------------------------------------------------------
  284-  318 (25.09/ 9.66)	LgrsAPSPGTAGTPNfeN....VSTPPMpyansPRSGTN
  446-  474 (32.93/11.18)	M...ANIPGTMQTMQ..SqsmmPQMQQF.....GLTGGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.94|      30|     172|     386|     417|       3
---------------------------------------------------------------------------
  334-  367 (38.06/ 8.95)	Q..RQKLMQASQQQ..QQQLRPSaagmlaQSSVPQLQD
  386-  417 (49.27/17.36)	QAQALSQFQNRQMQaaRMQPGMS......QSQLNQGNQ
  564-  592 (53.61/15.83)	QNQMQNQMQN.QLQ..NQMPNPN......FSQQRQQNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.61|      10|      22|     186|     195|       4
---------------------------------------------------------------------------
  186-  195 (18.93/ 9.85)	RQGANLGPML
  211-  220 (17.68/ 8.74)	RAAVNYGEGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24238 with Med8 domain of Kingdom Viridiplantae
Unable to open file!