<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24237

Description Uncharacterized protein
SequenceAPAMDAAAAPGAAAGGQQQQQPAPPRAERLNGEVQSQLNLEGMRARAVGLYKAISRILEDFDAIARVNPSGSPKWQDVLGQFSMVSMELFNIVEDIKKVNKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIDMIANACETAERVIAECRKTHGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVQVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQVNAFLVCYH
Length454
PositionHead
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.576
Instability index56.41
Isoelectric point8.95
Molecular weight48960.74
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24237
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.60|      29|      33|     243|     274|       1
---------------------------------------------------------------------------
    5-   27 (30.44/ 8.85)	....DAAAAPGAA.....AGGQ..QQQQPAPPRA...
  243-  274 (49.38/26.13)	PnnvNAQGNPMQA.....SGGQLLGRSAPSPGTAGTP
  278-  308 (41.78/15.90)	N....VSTPPMPYansprSGTNMM..NTPSPQQHLTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     169.26|      44|      48|     346|     393|       2
---------------------------------------------------------------------------
  309-  336 (31.65/ 7.10)	............QQQrqklMQASQQQ...QQQLRPS.A...AGM........LAQ
  346-  393 (78.49/35.74)	QGQAQQKVqvagQQQ....MQYSQAQALSQFQNRQMQA...ARMQPGMSQSQLNQ
  405-  443 (59.12/20.73)	TGAANSAM.............FTAAQASS...NSQMMAnipGTMQTMQSQSMMPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.72|      21|      33|      49|      69|       3
---------------------------------------------------------------------------
   49-   69 (35.14/28.51)	GLYKAIS....RILEDFDAIARVNP
   80-  104 (29.58/22.93)	GQFSMVSmelfNIVEDIKKVNKLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.22|       9|      33|     190|     201|       5
---------------------------------------------------------------------------
  190-  201 (12.52/14.85)	AVNYGEGlrvSG
  224-  232 (18.70/11.19)	AHNFGDN...SG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24237 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APAMDAAAAPGAAAGGQQQQQPAPPRAERLNGEVQS
2) GLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVQVAGQQQ
3) SQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQF
1
196
364
36
360
404










Molecular Recognition Features






MoRF SequenceStartStop




NANANA