<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24233

Description Uncharacterized protein
SequenceAMDAAAAPGAAAGGQQQQQPAPPRAERLNGEVQSQLNLEGMRARAVGLYKAISRILEDFDAIARVNPSGSPKWQDVLGQFSMVSMELFNIVEDIKKVNKGFVVYPRNVNAENAAILPVMLSSKLLPEMEVEETTKREQLLSGITNLPVPSQMEKLKARIDMIANACETAERVIAECRKTHGLGARQGANLGPMLDKAQAAKIQEQESLLRAAVNYGEGLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
Length591
PositionHead
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.747
Instability index57.11
Isoelectric point9.28
Molecular weight64293.58
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24233
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.88|      20|      21|     515|     535|       1
---------------------------------------------------------------------------
  515-  534 (39.94/10.06)	MQGGGQSLQQQGMVGLQNQQ
  538-  557 (39.94/11.12)	MQGGGQSLQQQGMVGLQNQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     103.45|      23|      23|     282|     304|       2
---------------------------------------------------------------------------
  246-  263 (26.58/ 9.77)	AHNFGD.NSG............AYPKNTP...........AF
  264-  294 (22.44/ 6.93)	SPNNVN....aqgnpmqasggqLLGRSAPS.....PGT..AG
  295-  320 (29.49/11.77)	TPNFENVSTP...........pMPYANSPR.....SGTnmMN
  321-  354 (24.94/ 8.64)	TPSPQQHLTP......qqqrqkLMQASQQQqqqlrPSA..AG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     355.21|      67|      80|     357|     423|       3
---------------------------------------------------------------------------
   66-  143 (70.03/20.44)	NP.SGSP.....K.WQDVLGQfsmvsmelfnivedikkvNKGFVVY................................................PRN...VNAENAAILP.....VMLSSKLLPEME..VEETTKREQLL.............S..GI
  144-  238 (58.52/15.79)	TN.LPVP....sQ.MEKLKAR........idmianacetAERVIAE................................................CRKthgLGARQGANLGPMLDK.AQAAKIQEQESllRAAVNYGEGLRvsgdqrqmhsslpSHLME
  357-  423 (121.39/41.22)	AQ.SSVP.....Q.LQDLQGQ..................AQQKVAG................................................QQQ...MQYSQAQALSQFQNRQMQAARMQPGMS..QSQLNQGNQLR.............SHLGQ
  436-  478 (59.59/16.22)	AQaSSNS.....QmMANIPG............................................................................................TMQTMQSQSMMPQM...QFGLTGGHPQR.............SH..Q
  488-  590 (45.67/10.59)	GG.ANTTsmmgmQ.MQQQQQQ..................QQQGLYGnmqgggqslqqqgmvglqnqqqnqmqgggqslqqqgmvglqnqqqnqmQNQ...MQ.NQMQ..NQLQN.QMP....NPNFS..QQ..RQQNQ....................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24233 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAPGAAAGGQQQQQPAPPRAERLNGEVQ
2) GLRVSGDQRQMHSSLPSHLMEVLATGDGAHNFGDNSGAYPKNTPAFSPNNVNAQGNPMQASGGQLLGRSAPSPGTAGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTPQQQRQKLMQASQQQQQQLRPSAAGMLAQSSVPQLQDLQGQAQQKVAGQQQMQYSQAQALSQFQNRQMQAARMQPGMSQSQLNQGNQLRSHLGQFTGAANSAMFTAAQASSNSQMMANIPGTMQTMQSQSMMPQMQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
4
218
33
591










Molecular Recognition Features






MoRF SequenceStartStop




NANANA