<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24232

Description Uncharacterized protein
SequenceMANIPGTMQTMQSQSMMPQMQQFGLTGGHPQRSHQMMTDQMYGMGGANTTSMMGMQMQQQQQQQQQGLYGNMQGGGQSLQQQGMVGLQNQQQNQMQGGGQSLQQQGMVGLQNQQQNQMQNQMQNQMQNQLQNQMPNPNFSQQRQQNQQ
Length148
PositionHead
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.03
Grand average of hydropathy-1.293
Instability index66.94
Isoelectric point8.38
Molecular weight16703.49
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24232
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.06|      20|      20|      72|      91|       1
---------------------------------------------------------------------------
   72-   91 (43.53/ 9.14)	MQGGGQSLQQQGMVGLQNQQ
   95-  114 (43.53/ 9.14)	MQGGGQSLQQQGMVGLQNQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.07|      25|      28|       9|      35|       2
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    9-   35 (39.92/14.24)	QT.MQSQsMMPQMQQFGLTGgHPQRSHQ
  123-  148 (41.15/ 8.75)	QNqMQNQ.LQNQMPNPNFSQ.QRQQNQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24232 with Med8 domain of Kingdom Viridiplantae
Unable to open file!