<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24216

Description Uncharacterized protein
SequenceSRARASLPSPSSSPLPAFSPRSPQSEVVERMFTRGGSGRSSSSSASGANRSASLREIDEEAAILHDADDDDGGGKLYVAVGKDIKDSRSNLVWAARNLFAGDPKLVLLHVHQPADRIMIGLCKVPASQVEEKELKAYRKIEKEEMNTLLNQYLNFCRVSLKMQAETLVIEKNSPANGIIELIDQNRITKLVMGTSSFSVKRKVPKSKVAASVHLQAKPYCQIFYICKEALGCSREATELCAKVESPRSSFASTISDQPELTPRSLSLPPGHPGLLGATGQQPFPRRSNSVSYPLSGLIADSVENMSAARRQSIDMTPTGSSPSSSQQSTGGSSLGLRDLDSMDGSPVPASVASSEEHQHSTVEIHEMFEQLHRVRNQLERSKKEASEGRQKAERDLFESSMMFKARESSLRKEKKEVEERLTKEKADLEKEHFHVCNELQKANEQRAELESKLLQTNALMEELQQLQVELQREKDHAVKEAEEMRQTNGNSVFGSTSAVALTEFSYTEIEEATDNFDDSKKIGSGGCGTVYKGFLRHTTVAIKKFNREGTTGDKEFNDEVETLSRMRHPNLVTLIGVCREAKALVFEFLSNGSLENCLQGEHQREPLSWRMRIRIAADICTGLIFLHSNKPKGIAHGDLKPDNVLLDNSFVCKLADFGISRPLDLTNTTVTPYHRTNQIKGTMGYMDPGYIASGEITAQYDVYSFGVVLMRLLTGKSPLGLPNEVEAALSNDMLQDIIDTSAGEWPTEYTEELARLALRCCRYERKERPNLANEAWGILQAMMNCPDDKCKPPTFFICPMTQEIMRDPHIAADGFTYEGEAIKDWLQRGHKCPP
Length834
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.526
Instability index45.99
Isoelectric point6.01
Molecular weight92559.64
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24216
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     144.22|      30|      47|     363|     392|       2
---------------------------------------------------------------------------
  363-  392 (47.25/31.28)	EIHEM.FEQLHRVRNQLERSK....KEASEGRQKA
  413-  442 (38.45/24.05)	EKKEV.EERLTKEKADLEKEH....FHVCNELQKA
  455-  488 (34.92/21.15)	QTNAL.MEELQQLQVELQREKdhavKEAEEMRQTN
  500-  526 (23.61/11.85)	ALTEFsYTEIEEATDNFDDSK....KIGSGG....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.83|      16|      21|     256|     275|       3
---------------------------------------------------------------------------
  256-  275 (22.94/26.33)	DQPelTPR...SLSLPpgHPGLL
  280-  298 (26.89/14.78)	QQP..FPRrsnSVSYP..LSGLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.20|      30|     271|      28|      58|      10
---------------------------------------------------------------------------
   28-   58 (48.52/32.11)	VERM.........FTRGGSGRSSSSSASGANrSASLREID
  302-  340 (47.68/26.99)	VENMsaarrqsidMTPTGSSPSSSQQSTGGS.SLGLRDLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24216 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASTISDQPELTPRSLSLPPGHPGLLGATGQQPFPRRSNSV
2) MSAARRQSIDMTPTGSSPSSSQQSTGGSSLGLRDLDSMDGSPVPASVASSEEHQHSTVEIHEMFEQLHRVRNQLERSKKEASEGRQKAERDLFESSMMFKA
3) SRARASLPSPSSSPLPAFSPRSPQSEVVERMFTRGGSGRSSSSSASGANRSA
251
305
1
290
405
52










Molecular Recognition Features






MoRF SequenceStartStop




NANANA