<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24213

Description Uncharacterized protein
SequenceMFTRGGSGRSSSSSASGANRSASLREIDEEAAILHDADDDDGGGKLYVAVGKDIKDSRSNLVWAARNLFAGDPKLVLLHVHQPADRIMIGLCKVPASQVEEKELKAYRKIEKEEMNTLLNQYLNFCRVSLKMQAETLVIEKNSPANGIIELIDQNRITKLVMGTSSFSVKRKVPKSKVAASVHLQAKPYCQIFYICKEALGCSREATELCAKVESPRSSFASTISDQPELTPRSLSLPPGHPGLLGATGQQPFPRRSNSVSYPLSGLIADSVENMSAARRQSIDSLLGSTDQQALPRRSNSVSYSLSGSIAGSVEIMSPARRQSIDMTPTGSSPSSSQQSTGGSSLGLRDLDSMDGSPVPASVASSEEHQHSTVEIHEMFEQLHRVRNQLERSKKEASEGRQKAERDLFESSMMFKARESSLRKEKKEVEERLTKEKADLEKEHFHVCNELQKANEQRAELESKLLQTNALMEELQQLQVELQREKDHAVKEAEEMRQTNGNSVFGSTSAVALTEFSYTEIEEATDNFDDSKKIGSGGCGTVYKGFLRHTTVAIKKFNREGTTGDKEFNDEVETLSRMRHPNLVTLIGVCREAKALVFEFLSNGSLENCLQGEHQREPLSWRMRIRIAADICTGLIFLHSNKPKGIAHGDLKPDNVLLDNSFVCKLADFGISRPLDLTNTTVTPYHRTNQIKGTMGYMDPGYIASGEITAQYDVYSFGVVLMRLLTGKSPLGLPNEVEAALSNDMLQDIIDTSAGEWPTEYTEELARLALRCCRYERKERPNLANEAWGILQAMMNCPDDKCKPPTFFICPMTQEIMRDPHIAADGFTYEGEAIKDWLQRGHKCPP
Length846
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.06
Grand average of hydropathy-0.509
Instability index44.88
Isoelectric point5.95
Molecular weight93801.99
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP24213
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.27|      41|      41|     244|     284|       1
---------------------------------------------------------------------------
  244-  284 (79.89/51.18)	LLGATGQQPFPRRSNSVSYPLSGLIADSVENMSAARRQSID
  286-  326 (76.26/48.51)	LLGSTDQQALPRRSNSVSYSLSGSIAGSVEIMSPARRQSID
  328-  354 (30.12/14.55)	..TPTGSSP...SSSQQSTGGSSLGLRDLDSM.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     196.74|      42|      47|     381|     427|       3
---------------------------------------------------------------------------
  367-  398 (50.08/33.50)	EEHQHST..VEIHE...MF...............EQLHRVRNQLERSK....KEAS
  399-  448 (56.99/47.72)	EGRQKAE..RDLFESSMMFKARESSLrkekkeveERLTKEKADLEKEH....FHVC
  449-  494 (38.45/23.86)	NELQKANeqRAELESKLL...QTNAL.......mEELQQLQVELQREKdhavKEAE
  495-  536 (51.21/34.44)	EMRQTNG..NSVFGSTSAVALTEFS........yTEIEEATDNFDDSK....KIGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.71|      29|      41|     157|     185|       8
---------------------------------------------------------------------------
  157-  185 (46.94/29.61)	ITKLVMGTS....SFSVKRKVPKSKVAASVHLQ
  195-  227 (44.77/27.92)	ICKEALGCSreatELCAKVESPRSSFASTISDQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24213 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASTISDQPELTPRSLSLPPGHPGLLGATGQQP
2) EIMSPARRQSIDMTPTGSSPSSSQQSTGGSSLGLRDLDSMDGSPVPASVASSEEHQHSTVEIHEMFEQLHRVRNQLERSKKEASEGRQKAERDLFESSMMFKA
221
315
252
417










Molecular Recognition Features






MoRF SequenceStartStop




1) ASLREIDEEAAIL
22
34