<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24194

Description Uncharacterized protein
SequenceMDAFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSPGSSLNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAETVAVSFAQSSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKNPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMISSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSANNSSAMNMPLAQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDTLASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGFSAEFSPGYGGIQTTGLNSAATDAATAAAAAATTAAAPNTAATAATTATLQQQQLQQHQMQMQPQGQQLQQQQQMQQMQQQQQQMQQMQHQQQQQQQQIQQQQQMQQQQQQQQQQQQMQQMQQQQQQQQQPQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKITPQGPGNMSGGGYLS
Length757
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.418
Instability index51.56
Isoelectric point8.51
Molecular weight80503.85
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24194
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     112.07|      12|      18|     645|     656|       1
---------------------------------------------------------------------------
  645-  656 (29.20/ 9.16)	QLQQQQQMQQMQ
  661-  672 (25.02/ 6.77)	QMQQMQHQQQQQ
  675-  686 (28.05/ 8.50)	QIQQQQQMQQQQ
  688-  699 (29.80/ 9.50)	QQQQQQQMQQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.55|      29|      29|     330|     358|       2
---------------------------------------------------------------------------
  330-  358 (47.47/17.02)	SSISGTVQPIGAQQLVQNTALGSFGSNTS
  387-  409 (36.75/11.62)	SMAQGGLM.AGPQ.....SGQGGIGTNQN
  417-  445 (44.33/15.44)	TAISSTPTMMPTPGMVQQTGVNALSANNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     272.65|      63|      64|     158|     220|       3
---------------------------------------------------------------------------
   57-  103 (30.56/10.48)	.......................AASNPYPlPTPVyRPSVQSSDHKKSNEATkesclA...DAETVAVSFAQS
  106-  155 (71.23/34.88)	SLSVVSPKQL.P..TLKAIYNAGKRN.....PQAS.DPSVD...HAKNPHFL.....V...LLSESF...MEA
  158-  220 (109.44/57.80)	ALSHPLPGNLVPNHTITKMDTAPAATVPGP.PSNA.TPSVNGTMMGRQPTAN.....V...KVEPTTIPPMVS
  223-  277 (61.42/28.99)	AFSHMTPISNVASQGVSAMQTSS....PSI.ISQE.TNVANEILQEHKPLVN.....PiqqQVRPG.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.80|      14|      15|     597|     610|       6
---------------------------------------------------------------------------
  597-  610 (22.10/13.32)	AATDAATAAAAAAT
  613-  626 (23.71/14.83)	AAPNTAATAATTAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      14.53|       9|      41|     525|     539|       7
---------------------------------------------------------------------------
  530-  569 (-3.26/ 6.58)	VFRtlnqhGFlgqlqekklcaviqlpsqtlllsvsdKAGR
  574-  582 (17.79/ 6.03)	LFP.....GF..........................SAEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.33|      19|      19|     704|     722|       8
---------------------------------------------------------------------------
  704-  722 (36.03/14.24)	QQQQPQQLQQQPQMVGTGM
  724-  742 (34.30/13.16)	QQQFMQGHGRAVQMMQGKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.76|      15|      17|     458|     474|       9
---------------------------------------------------------------------------
  458-  474 (19.44/20.80)	GQqPSKYVKIwEGTLSG
  478-  492 (30.32/17.94)	GQ.PVFICKL.EGYRSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24194 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
2) IQTTGLNSAATDAATAAAAAATTAAAPNTAATAATTATLQQQQLQQHQMQMQPQGQQLQQQQQMQQMQQQQQQMQQMQHQQQQQQQQIQQQQQMQQQQQQQQQQQQMQQMQQQQQQQQQPQQLQQQPQMVGTGMGQQQFMQGHGRAVQMMQGKITPQGPGNMSGGGYLS
3) PSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNAL
158
589
386
317
757
440










Molecular Recognition Features






MoRF SequenceStartStop




NANANA