<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24193

Description Uncharacterized protein
SequenceMVEGMGSERQLVVAVEGTAALGPYWPAIAAEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFIVQRSGWTKDMDAFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSPGSSLNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAETVAVSFAQSSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKNPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMISSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSANNSSAMNMPLAQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDTLASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQPQQQQQQLQQQQHQIQQQQQQLQQLCNSSNYNSTKCKCSLKASNFSSSSRCSKCNSNNNRCSKCNTNNSSSSSRFNSSNRCSSSSSSNSNNNRCSKCSSSSSSSNSLNNSSSSRRWWVQGWVSNNSCRGMVGRCR
Length810
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.336
Instability index47.93
Isoelectric point9.18
Molecular weight86216.26
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24193
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     111.38|      15|      15|     756|     770|       1
---------------------------------------------------------------------------
  701-  714 (27.18/11.08)	C..NS..SNYNSTKCKCS
  721-  737 (25.50/ 9.93)	S.SSSrcSKCNSNNNRCS
  756-  770 (33.28/15.29)	C.SSS..SSSNSNNNRCS
  772-  787 (25.42/ 9.87)	CsSSS..SSSNSLNNSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     301.51|      49|      50|     360|     408|       2
---------------------------------------------------------------------------
  245-  286 (58.72/23.58)	..................PGNL.VPNHTITKMDTAPAATVPGPPSNATP.....SVNGT......MMGRQPT
  287-  319 (35.19/11.22)	ANVKV........epttiPPMVSA.PAFS.H...............MTP....I....S......NVASQGV
  324-  358 (38.14/12.77)	TSSPS...........iiSQETNVANEILQEHKPLV...........NP....IQ..........QQVRPG.
  360-  403 (68.16/28.54)	..................PANVSILNNLSQHRHSLTAATSMGPNMGATP....IQVHMS......NMISSGM
  404-  474 (43.48/15.58)	TSTPAvissisgtvqpigAQQL.VQNTALGSFGSNTSTVSGNSNIAVSSslanIQSNMAmgqsvpSMAQGGL
  475-  512 (57.83/23.11)	MAGP........................QSGQGGIGTNQNMINNLGTTA....ISSTPT......MMPTPGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.44|      28|      45|     514|     541|       3
---------------------------------------------------------------------------
  514-  541 (49.36/30.47)	QQTG....VNALSANNSSAMNMPLAQH.PNGQQ
  556-  588 (39.09/22.51)	QRQGqpvfICKLEGYRSGTASDTLASDwPETMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.17|      14|      15|     670|     683|       4
---------------------------------------------------------------------------
  670-  683 (29.91/14.38)	QQPQMQPQQQQ.QQL
  686-  700 (24.26/10.47)	QQHQIQQQQQQlQQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.40|      34|      50|     142|     189|       5
---------------------------------------------------------------------------
  142-  180 (50.87/53.87)	PYPLPT..PVY...R.......PSVqssDHKKSNE...ATKESCLaDAETvAVS
  193-  241 (41.53/16.32)	PKQLPTlkAIYnagKrnpqasdPSV...DHAKNPHflvLLSESFM.EART.ALS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24193 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
2) PSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNAL
239
467
398
521










Molecular Recognition Features






MoRF SequenceStartStop




1) RRWWVQGWVSNNSCRGMVG
789
807