<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24191

Description Uncharacterized protein
SequenceMVEGMGSERQLVVAVEGTAALGPYWPAIAAEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFIVQRSGWTKDMDAFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSPGSSLNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAETVAVSFAQSSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKNPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMISSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSANNSSAMNMPLAQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDTLASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQPQQQQQQLQQQQHQIQQQQQQLQQLCNSSNYNSTKCKCSLKASNFSSSSRCSKCNSNNNRCSKCNTNNSSSSSRFNSSNRCSSSSSSNSNNNRCSKCSSSSSRMGQQQFMQGHGRAVQMMQGKITPQGPGNMSGGGYLS
Length814
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.04
Grand average of hydropathy-0.330
Instability index45.72
Isoelectric point9.13
Molecular weight86409.67
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24191
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.70|      19|      27|     245|     269|       1
---------------------------------------------------------------------------
  249-  267 (34.17/17.29)	VPNHTITKMDTAPAATVPG
  291-  309 (33.53/10.61)	VEPTTIPPMVSAPAFSHMT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.58|      24|      27|     701|     726|       2
---------------------------------------------------------------------------
  701-  724 (47.36/19.82)	CNSSNYNSTKC.KCSLKASNFSSSS
  729-  747 (32.77/14.23)	CNSNN...NRCsKCN...TNNSSSS
  748-  767 (30.45/11.68)	...SRFNSSN..RCSSSSSSNSNNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     215.91|      44|      49|     360|     403|       3
---------------------------------------------------------------------------
  320-  359 (34.33/11.43)	SAmqtsspsiisqetNVA..NEILQ..EHKPLV.N..........PIQQQ......VRPGG
  360-  403 (76.89/33.90)	PA.............NVSILNNLSQ..HRHSLTAATSMGPNMGATPIQVH.MSNM.ISSGM
  407-  453 (48.34/18.82)	PA.............VISSISGTVQpiGAQQLVQNTALG.SFGSNTSTVSgNSNIaVSSSL
  478-  512 (56.36/23.06)	P......................QS..GQGGIGTNQNMINNLGTTAISST.PTMM.PTPGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.15|      15|      20|     666|     683|       4
---------------------------------------------------------------------------
  669-  683 (31.29/16.73)	TQQPQMQPQQQQ.QQL
  685-  700 (25.86/ 6.74)	QQQHQIQQQQQQlQQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.40|      34|      50|     142|     189|       5
---------------------------------------------------------------------------
  142-  180 (50.87/48.65)	PYPLPT..PVY...R.......PSVqssDHKKSNE...ATKESCLaDAETvAVS
  193-  241 (41.53/14.74)	PKQLPTlkAIYnagKrnpqasdPSV...DHAKNPHflvLLSESFM.EART.ALS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.76|      15|      19|     539|     555|       6
---------------------------------------------------------------------------
  539-  555 (19.44/23.57)	GQqPSKYVKIwEGTLSG
  559-  573 (30.32/20.34)	GQ.PVFICKL.EGYRSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24191 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
2) GQQQFMQGHGRAVQMMQGKITPQGPGNMSGGGYLS
3) PSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNAL
239
780
467
398
814
521










Molecular Recognition Features






MoRF SequenceStartStop




NANANA