<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24190

Description Uncharacterized protein
SequenceGMGSERQLVVAVEGTAALGPYWPAIAAEYVEKIVRSFCSTELSGQKLAGVPPELALVVFHTHGPYSAFIVQRSGWTKDMDAFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSPGSSLNHQNRELQKHCLLVAASNPYPLPTPVYRPSVQSSDHKKSNEATKESCLADAETVAVSFAQSSVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHAKNPHFLVLLSESFMEARTALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNMISSGMTSTPAVISSISGTVQPIGAQQLVQNTALGSFGSNTSTVSGNSNIAVSSSLANIQSNMAMGQSVPSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNALSANNSSAMNMPLAQHPNGQQPSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDTLASDWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGVCL
Length658
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.106
Instability index42.03
Isoelectric point8.15
Molecular weight69184.98
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24190
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     232.15|      39|      39|     440|     478|       1
---------------------------------------------------------------------------
  356-  384 (42.01/14.42)	G.PANVSILNNLSQHRHSLTAATSM..............GPNMG
  399-  431 (30.37/ 8.68)	GmTSTPAVISSISGTVQPIGAQQLVQN....TALGSF.......
  440-  478 (65.38/25.93)	G.NSNIAVSSSLANIQSNMAMGQSVPS....MAQGGLMAGPQSG
  480-  514 (46.22/16.49)	...GGIGTNQNMINNLGTTAIS.STPT....MMPTPGMV.QQTG
  520-  556 (48.16/17.45)	A.NNSSAMNMPLAQ.HPN...GQQ.PSkyvkIWEGTL.SGQRQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.21|      37|      39|     246|     282|       2
---------------------------------------------------------------------------
  246-  282 (68.85/30.58)	VPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQP
  288-  324 (66.36/29.23)	VEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.74|      45|     555|      14|      63|       4
---------------------------------------------------------------------------
   14-   63 (73.94/55.30)	GTAA..LGPYWPAIAaeyveKIVRSFCSTELSGQKLAGVPPELALVVFHTHG
  570-  616 (74.80/45.55)	GTASdtLASDWPETM.....QIVRLIAQEHMNNKQYVGKADFLVFRTLNQHG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24190 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSHPLPGNLVPNHTITKMDTAPAATVPGPPSNATPSVNGTMMGRQPTANVKVEPTTIPPMVSAPAFSHMTPISNVASQGVSAMQTSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLTAATSMGPNMGATPIQVHMSNM
2) PSMAQGGLMAGPQSGQGGIGTNQNMINNLGTTAISSTPTMMPTPGMVQQTGVNAL
236
464
395
518










Molecular Recognition Features






MoRF SequenceStartStop




NANANA