<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24184

Description Uncharacterized protein
SequenceLTGLGKAITVGSDCAPRKRSLSDFLLDLPSLQGLKSGEPSKRRRISESAQSSLPLQTYSSSSQSGTSLTHGNNILAERNNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMYSSAIPYVEEVGMRSPSSNIWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVEADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGMKSQSVNKGHSDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPVANRLNATPGVAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELTSAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREILKLITWKKGFSQAHGDIATAQRARIELCLENHSGSASDDRTESSLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNSHISFLAINGSHGGRACWLQSEDWERCKQKVARAVETVNGTPAVAEPGQGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS
Length942
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.117
Instability index51.14
Isoelectric point8.88
Molecular weight101805.99
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24184
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     694.21|     150|     158|     280|     434|       1
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   24-  113 (88.09/41.20)	...........................................................................FL.....LD.......LPSLQGLKSGEPSKRRR...ISESAQ.SSLPLQTYSSSSQSgtSLTHGNN.........ILAERNNCVPATVYASVLLHVIrHCSLCIK............HA.QLTAQ..MYS
  117-  279 (180.19/94.16)	PY.VEEVGMRSpssnIWF...RLP...FAQDdsW...KHICLRLGKAGSMsWdvrindPHFKELWEL.NGGSTSTPWGVgVRIA.......NTSEMDSHISFDADGVV...LTYSTVEADSVKRL..VSDLQ..RLANARVfargmrrliGVKLDDKLDDNHISVGMKSQSV.NKGH..S............DADRLSEQ..MGK
  280-  434 (246.99/144.41)	PFRIEAVGLMS....FWFSYGHMPmvHFVVE..WEtaKEGCTMHVSPDQL.W......PHTKFLEDFvNGGEVASFLDC.IRLT.......AGPLLALGGAIRPARMP...VTVSTGYSSMPKQTNNVPSQG..PLANGSS.........ATTMHHASAPSNATAHLGGHTL.HTAAMLS............AAGRGGPG..LVP
  439-  589 (178.93/93.45)	PFDVSVVLRGP....YWIRIIYRK..KFSVD..MR.....C...FAGDQV.W......LQPATPPK..GGPSVGGSLPC.PQFRpfimehvAQGLNALEPAFMNATQPgphLNTSAG..........APQSA..PVANRLN.........ATPGVAMSRPTSSVAN.......HVAASLSragnamlsssglASGIGGASvrLTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.77|      18|     135|     611|     633|       2
---------------------------------------------------------------------------
  615-  633 (29.04/30.08)	GGGWV....PlAALKKVLRGILK
  636-  657 (26.73/10.24)	GVLWLfaqlP.ELLKEILGSILK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24184 with Med14 domain of Kingdom Viridiplantae
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