<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24183

Description Uncharacterized protein
SequenceVQTPFRPLILEHGIADGNKPFQLAPSSTLPAHLVRSSPAIEGLGKAITVGSDCAPRKRSLSDFLLDLPSLQGLKSGEPSKRRRISESAQSSLPLQTYSSSSQSGTSLTHGNNILAERNNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMYSSAIPYVEEVGMRSPSSNIWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVEADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGMKSQSVNKGHSDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPVANRLNATPGVAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYV
Length716
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.084
Instability index52.63
Isoelectric point9.07
Molecular weight76681.89
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24183
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.06|      17|      19|     436|     452|       1
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  438-  455 (25.30/11.29)	HHASAPSNATAHLGGhTL
  456-  468 (18.81/ 6.51)	HTAAMLS..AAGRGG...
  597-  609 (21.95/ 8.82)	HVAASLSRA....GN.AM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.96|      16|      28|      38|      58|       2
---------------------------------------------------------------------------
   38-   58 (19.19/25.87)	PAIEGLgKAitvgSDCAPRKR
   68-   83 (28.77/17.34)	PSLQGL.KS....GEPSKRRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.93|      47|     158|     156|     215|       3
---------------------------------------------------------------------------
  156-  215 (76.42/65.16)	PY.VEEVGMRSpssnIWF...RLP...FAQDdsW...KHICLRLGKAGSMsWdvrindPHFKELWEL.NGG
  319-  376 (73.51/36.94)	PFrIEAVGLMS....FWFsygHMPmvhFVVE..WetaKEGCTMHVSPDQL.W......PHTKFLEDFvNGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.52|      16|      19|     562|     577|       4
---------------------------------------------------------------------------
  561-  576 (29.97/16.62)	PHLNTSAGAPQSAP...VA
  577-  595 (23.56/11.44)	NRLNATPGVAMSRPtssVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.08|      19|      19|     653|     671|       5
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  620-  640 (22.37/ 8.52)	..GGASVrltPGTGLPVHMKGEL
  653-  671 (34.77/16.85)	Y.GGGWV...PLAALKKVLRGIL
  673-  691 (26.94/11.59)	YlGVLWL....FAQLPELLKEIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.65|      19|      19|     253|     271|       6
---------------------------------------------------------------------------
  253-  271 (28.93/20.67)	ADSVKRLVS.DL.QRLANARV
  273-  293 (20.95/12.75)	ARGMRRLIGvKLdDKLDDNHI
  299-  314 (19.78/11.59)	SQSVNKGHS.DA.DRLSE...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.08|      25|     526|       5|      30|       7
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    5-   30 (42.69/24.81)	FRPLILEHgIADGNKPFQLA.PSSTLP
  534-  559 (43.39/21.13)	FRPFIMEH.VAQGLNALEPAfMNATQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.01|      11|      19|     401|     413|       8
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  401-  413 (16.47/14.38)	PARMPvtVSTGYS
  423-  433 (20.53/10.87)	PSQGP..LANGSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24183 with Med14 domain of Kingdom Viridiplantae
Unable to open file!