<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24180

Description Uncharacterized protein
SequenceVQKTEKASFADFCGNEVLQVRAYGQAYIGLGVNIRSGRFILQSPKNILPPSALLDWEEALNKGSNTATEVFSSLRTRSILHLLVSTGSFFGLKVYEQSQGTLKIPEAILHGSDLMVMGFPQCANAYYLLMQLDKDFRPVFHLLETQSDASNKFNANIDAKEAMRVNKIDVGQMEKIKYEKNSNPFDAKLHSLQSIENCDDMMDNQLLIQNSVDPLPLLPACSPSFSSIVDETFECEHGSSLPSASPVRSLSLGPQGVSTRTISQMQDGALSHAQANNTSIVRPGVGVNSYFPTSLSHLQSTNAFSSSNPVRNSSAIKLSNSKPNHDLSSLSSPSEHGIADGNKPFQLAPSSTLPAHLVRSSPAIEGLGKAITVGSDCAPRKRSLSDFLLDLPSLQGLKSGEPSKRRRISESAQSSLPLQTYSSSSQSGTSLTHGNNILAERNNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMYSSAIPYVEEVGMRSPSSNIWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVEADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGMKSQSVNKGHSDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPVANRLNATPGVAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELTSAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREILKLITWKKGFSQAHGDIATAQRARIELCLENHSGSASDDRTESSLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNSHISFLAINGSHGGRACWLQSEDWERCKQKVARAVETVNGTPAVAEPGQGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS
Length1305
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.160
Instability index53.11
Isoelectric point8.35
Molecular weight141187.88
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24180
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     703.23|     153|     157|     643|     797|       1
---------------------------------------------------------------------------
  281-  349 (53.55/19.36)	.................................................................................................................................................VRPG.......VGVNSYFpTSLShlQSTNAFSSSN..PVRN.SSAIKLSN.SKPNHDLSSLSSPSE.HGI....ADGNKPFQLAP
  354-  469 (96.11/40.56)	...................................................PAHL.V......RSSPAIEGLGKAITVGS..................................DCAprkRSL.......SDFLLdlpSLQGlkSGEPSK.RR...RISESAQ.SSLP..LQTYSSSSQSgtSLTHGNNILAERNNCVPATVYASVLLHVIrHCSLCIKHAQ........
  480-  641 (125.94/55.81)	PY.VEEVGMRSpssnIWF.....R...LP...FAQDdsW...KHICLRLGKAGSMsWdvrindPHFKELWEL.NGGSTSTPWgvgvriantsemdshisfdadgvvltystveaDSV...KRL.......VSDLQ...RLAN..ARVFARgMR...RLI..GV.KLDD..KLDDNHISVG.....MKSQSVNKGHSDA..DRLSEQMG......................
  643-  797 (268.02/130.62)	PFRIEAVGLMS....FWFS..YGH...MPMVHFVVE..WetAKEGCTMHVSPDQL.W......PHTKFLEDFVNGGEVASFL................................DCI...RLT.......AGPLL...ALGG..AIRPAR.MP...VTVSTGY.SSMP..KQTNNVPSQG..PLANGSSATTMHHASAPSNATAHLGGHTL.HTAAMLSAAGRGGPGLVP
  802-  933 (159.61/72.58)	PFDVSVVLRGP....YWIRiiYRKkfsVDMRCF........AG.........DQV.W......LQPATPPK..GGPSVGGSL................................PCP...QFRpfimehvAQGLN...ALEP..AFMNAT.QPgphLNTSAG.............APQSA..PVANRLNATPGVAMSRPTSSVAN.......HVAASLS...RAGNAM..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.91|      15|      23|     981|     996|       2
---------------------------------------------------------------------------
  981-  996 (24.08/17.55)	W....VPlAALKKVLRGILK
 1002- 1020 (21.83/10.97)	WlfaqLP.ELLKEILGSILK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.50|      28|      31|     166|     195|       3
---------------------------------------------------------------------------
  166-  195 (42.65/43.08)	NKIDVgqMEKIKYEKNS.NP...FDAKLHSLQSI
  197-  228 (40.85/32.24)	NCDDM..MDNQLLIQNSvDPlplLPACSPSFSSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.60|      19|     663|     547|     565|       5
---------------------------------------------------------------------------
  547-  565 (34.16/24.40)	VGVRIANTSEMDSHISFDA
 1212- 1230 (34.43/24.66)	VSVRLRYSFGDNSHISFLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24180 with Med14 domain of Kingdom Viridiplantae
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