<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24180

Description Uncharacterized protein
SequenceVQKTEKASFADFCGNEVLQVRAYGQAYIGLGVNIRSGRFILQSPKNILPPSALLDWEEALNKGSNTATEVFSSLRTRSILHLLVSTGSFFGLKVYEQSQGTLKIPEAILHGSDLMVMGFPQCANAYYLLMQLDKDFRPVFHLLETQSDASNKFNANIDAKEAMRVNKIDVGQMEKIKYEKNSNPFDAKLHSLQSIENCDDMMDNQLLIQNSVDPLPLLPACSPSFSSIVDETFECEHGSSLPSASPVRSLSLGPQGVSTRTISQMQDGALSHAQANNTSIVRPGVGVNSYFPTSLSHLQSTNAFSSSNPVRNSSAIKLSNSKPNHDLSSLSSPSEHGIADGNKPFQLAPSSTLPAHLVRSSPAIEGLGKAITVGSDCAPRKRSLSDFLLDLPSLQGLKSGEPSKRRRISESAQSSLPLQTYSSSSQSGTSLTHGNNILAERNNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMYSSAIPYVEEVGMRSPSSNIWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVEADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGMKSQSVNKGHSDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPVANRLNATPGVAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELTSAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREILKLITWKKGFSQAHGDIATAQRARIELCLENHSGSASDDRTESSLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNSHISFLAINGSHGGRACWLQSEDWERCKQKVARAVETVNGTPAVAEPGQGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS
Length1305
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.160
Instability index53.11
Isoelectric point8.35
Molecular weight141187.88
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24180
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     703.23|     153|     157|     643|     797|       1
---------------------------------------------------------------------------
  281-  349 (53.55/19.36)	.................................................................................................................................................VRPG.......VGVNSYFpTSLShlQSTNAFSSSN..PVRN.SSAIKLSN.SKPNHDLSSLSSPSE.HGI....ADGNKPFQLAP
  354-  469 (96.11/40.56)	...................................................PAHL.V......RSSPAIEGLGKAITVGS..................................DCAprkRSL.......SDFLLdlpSLQGlkSGEPSK.RR...RISESAQ.SSLP..LQTYSSSSQSgtSLTHGNNILAERNNCVPATVYASVLLHVIrHCSLCIKHAQ........
  480-  641 (125.94/55.81)	PY.VEEVGMRSpssnIWF.....R...LP...FAQDdsW...KHICLRLGKAGSMsWdvrindPHFKELWEL.NGGSTSTPWgvgvriantsemdshisfdadgvvltystveaDSV...KRL.......VSDLQ...RLAN..ARVFARgMR...RLI..GV.KLDD..KLDDNHISVG.....MKSQSVNKGHSDA..DRLSEQMG......................
  643-  797 (268.02/130.62)	PFRIEAVGLMS....FWFS..YGH...MPMVHFVVE..WetAKEGCTMHVSPDQL.W......PHTKFLEDFVNGGEVASFL................................DCI...RLT.......AGPLL...ALGG..AIRPAR.MP...VTVSTGY.SSMP..KQTNNVPSQG..PLANGSSATTMHHASAPSNATAHLGGHTL.HTAAMLSAAGRGGPGLVP
  802-  933 (159.61/72.58)	PFDVSVVLRGP....YWIRiiYRKkfsVDMRCF........AG.........DQV.W......LQPATPPK..GGPSVGGSL................................PCP...QFRpfimehvAQGLN...ALEP..AFMNAT.QPgphLNTSAG.............APQSA..PVANRLNATPGVAMSRPTSSVAN.......HVAASLS...RAGNAM..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.91|      15|      23|     981|     996|       2
---------------------------------------------------------------------------
  981-  996 (24.08/17.55)	W....VPlAALKKVLRGILK
 1002- 1020 (21.83/10.97)	WlfaqLP.ELLKEILGSILK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.50|      28|      31|     166|     195|       3
---------------------------------------------------------------------------
  166-  195 (42.65/43.08)	NKIDVgqMEKIKYEKNS.NP...FDAKLHSLQSI
  197-  228 (40.85/32.24)	NCDDM..MDNQLLIQNSvDPlplLPACSPSFSSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.60|      19|     663|     547|     565|       5
---------------------------------------------------------------------------
  547-  565 (34.16/24.40)	VGVRIANTSEMDSHISFDA
 1212- 1230 (34.43/24.66)	VSVRLRYSFGDNSHISFLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24180 with Med14 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASPVRSLSLGPQGVSTRTISQMQDGALSHAQANNT
2) PVRNSSAIKLSNSKPNHDLSSLSSPSEHGIADGNKPFQ
3) TGYSSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATA
244
309
734
278
346
772










Molecular Recognition Features






MoRF SequenceStartStop




NANANA