<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24177

Description Uncharacterized protein
SequenceMYSSAIPYVEEVGMRSPSSNIWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVEADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGMKSQSVNKGHSDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPVANRLNATPGVAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQAQSNAQEELTSAEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREILKLITWKKGFSQAHGDIATAQRARIELCLENHSGSASDDRTESSLAKSNIHHDRAHSSVEFALTFVLDHALIPHMNVAGGAAWLPYCVSVRLRYSFGDNSHISFLAINGSHGGRACWLQSEDWERCKQKVARAVETVNGTPAVAEPGQGRLRMVAEMIQKQLQLCLQQLRDGPLSAGSTAS
Length832
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.107
Instability index48.48
Isoelectric point8.51
Molecular weight90078.74
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24177
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     622.10|     148|     158|     170|     324|       1
---------------------------------------------------------------------------
    7-  169 (191.53/91.35)	PY.VEEVGMRSpssnIWF...RLP...FAQDdsW...KHICLRLGKAGSMsWdvrindPHFKELWEL.NGGSTSTPWGVgVRIA.......NTSEMDSHISFDADGVV...LTYSTVEADSVKRL..VSDLQRLANARVfargmrrliGVKLDDKLDDNHISVGMKSQSVNKGH..S............DADRLSEQ..MGK
  170-  324 (243.51/133.85)	PFRIEAVGLMS....FWFSYGHMPmvHFVVE..WEtaKEGCTMHVSPDQL.W......PHTKFLEDFvNGGEVASFLDC.IRLT.......AGPLLALGGAIRPARMP...VTVSTGYSSMPKQTnnVPSQGPLANGSS.........ATTMHHASAPSNATAHLGGHTLHTAAMLS............AAGRGGPG..LVP
  329-  479 (187.06/89.07)	PFDVSVVLRGP....YWIRIIYRK..KFSVD..MR.....C...FAGDQV.W......LQPATPPK..GGPSVGGSLPC.PQFRpfimehvAQGLNALEPAFMNATQPgphLNTSAG..........APQSAPVANRLN.........ATPGVAMSRPTSSVAN......HVAASLSragnamlsssglASGIGGASvrLTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.77|      18|     135|     501|     523|       2
---------------------------------------------------------------------------
  505-  523 (29.04/26.86)	GGGWV....PlAALKKVLRGILK
  526-  547 (26.73/ 9.22)	GVLWLfaqlP.ELLKEILGSILK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24177 with Med14 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TGYSSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATA
261
299










Molecular Recognition Features






MoRF SequenceStartStop




1) IWFRL
21
25