<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24175

Description Uncharacterized protein
SequencePYCLSLRHDQMTARYLCLCLVMYSSLVFFSFIVLQLISLFNRSGRFILQSPKNILPPSALLDWEEALNKGSNTATEVFSSLRTRSILHLLVSTGSFFGLKVYEQSQGTLKIPEAILHGSDLMVMGFPQCANAYYLLMQLDKDFRPVFHLLETQSDASNKFNANIDAKEAMRVNKIDVGQMEKIKYEKNSNPFDAKLHSLQSIENCDDMMDNQLLIQNSVDPLPLLPACSPSFSSIVDETFECEHGSSLPSASPVRSLSLGPQGVSTRTISQMQDGALSHAQANNTSIVRPGVGVNSYFPTSLSHLQSTNAFSSSNPVRNSSAIKLSNSKPNHDLSSLSSPSEHGIADGNKPFQLAPSSTLPAHLVRSSPAIEGLGKAITVGSDCAPRKRSLSDFLLDLPSLQGLKSGEPSKRRRISESAQSSLPLQTYSSSSQSGTSLTHGNNILAERNNCVPATVYASVLLHVIRHCSLCIKHAQLTAQMYSSAIPYVEEVGMRSPSSNIWFRLPFAQDDSWKHICLRLGKAGSMSWDVRINDPHFKELWELNGGSTSTPWGVGVRIANTSEMDSHISFDADGVVLTYSTVEADSVKRLVSDLQRLANARVFARGMRRLIGVKLDDKLDDNHISVGMKSQSVNKGHSDADRLSEQMGKPFRIEAVGLMSFWFSYGHMPMVHFVVEWETAKEGCTMHVSPDQLWPHTKFLEDFVNGGEVASFLDCIRLTAGPLLALGGAIRPARMPVTVSTGYSSMPKQTNNVPSQGPLANGSSATTMHHASAPSNATAHLGGHTLHTAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPAFMNATQPGPHLNTSAGAPQSAPVANRLNATPGVAMSRPTSSVANHVAASLSRAGNAMLSSSGLASGIGGASVRLTPGTGLPVHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKDNEGALLNLDQEQPALRFYV
Length1047
PositionTail
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.07
Grand average of hydropathy-0.108
Instability index53.79
Isoelectric point8.48
Molecular weight113049.73
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24175
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     709.12|     153|     157|     650|     804|       1
---------------------------------------------------------------------------
  306-  356 (34.09/10.19)	.......................................................................................................................................QSTNAFSSSN..PVRN.SSAIKLSN.SKPNHDLSSLSSPSE.HGI....ADGNKPFQLAP
  361-  476 (96.92/43.15)	...................................................PAHL.V......RSSPAIEGLGKAITVGS..DC.AprkRSL.......SDFLLdlpSLQGlkSGEPSKRR...RISESAQSSLPLQTYSSSSQSgtSLTHGNNILAERNNCVPATVYASVLLHVIrHCSLCIKHAQ........
  487-  612 (149.91/71.36)	PY.VEEVGMRSpssnIWF.....R...LP...FAQDdsW...KHICLRLGKAGSMsWdvrindPHFKELWEL.NGGSTSTPWGVgV...RIA.......NTSEM...DSHI..SFDADGVV...LTYSTVEADSVKRL..VSDLQ..RLANA...............................RVFARGMRRLIG
  650-  804 (265.86/136.44)	PFRIEAVGLMS....FWFS..YGH...MPMVHFVVE..WetAKEGCTMHVSPDQL.W......PHTKFLEDFVNGGEVASFLDC.I...RLT.......AGPLL...ALGG..AIRPARMP...VTVSTGYSSMPKQTNNVPSQG..PLANGSSATTMHHASAPSNATAHLGGHTL.HTAAMLSAAGRGGPGLVP
  809-  940 (162.33/77.88)	PFDVSVVLRGP....YWIRiiYRKkfsVDMRCF........AG.........DQV.W......LQPATPPK..GGPSVGGSLPC.P...QFRpfimehvAQGLN...ALEP..AFMNATQPgphLNTSAG..........APQSA..PVANRLNATPGVAMSRPTSSVAN.......HVAASLS...RAGNAM..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.80|      22|      28|     951|     977|       2
---------------------------------------------------------------------------
  951-  977 (31.15/29.47)	GGASVrltPGTGLPVHMKGELNtaFIG
  985- 1006 (39.65/22.22)	GGGWV...PLAALKKVLRGILK..YLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.50|      28|      32|     173|     203|       4
---------------------------------------------------------------------------
  173-  202 (42.65/33.52)	NKIDVgqMEKIKYEKNS.NP...FDAKLHSLQSI
  204-  235 (40.85/20.82)	NCDDM..MDNQLLIQNSvDPlplLPACSPSFSSI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24175 with Med14 domain of Kingdom Viridiplantae
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