<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24171

Description Uncharacterized protein
SequenceMDADGRLRRALSAFGGGDVWDLVDAALAAAAPADLRARRDGIVERLYAGGRCRNCDAPESPPQPPRQPAEAASPAWQEEGEEEEEADVDDLGLEEETDEGGGLESKILAIKDFLEDPDQSEEELVSLLQNLADMDITYKALQETDIGRHVNGLRKHPSGDVRQLVKLLVRKWKEIVDGWVRLHNSGGDGGNSILTDGDSPEKTQGKSYQNARVSDFKYTPSPPQRHSGSERSRNNNGFESTLERRRASPAPTYHTKQNNVNNYTTTSSSAPARAMREQKDNHLDEKLDSARKRLQENYQEAQNAKKQRTMQVLDIHDIPKPKNKNTFIRKPGGGGLPGRHR
Length341
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-1.052
Instability index65.09
Isoelectric point5.63
Molecular weight37877.24
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24171
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.01|      18|      31|      14|      32|       1
---------------------------------------------------------------------------
   14-   32 (27.80/21.74)	FGGGDVWDlVDAALAAAAP
   47-   64 (37.21/24.73)	YAGGRCRN.CDAPESPPQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     142.18|      40|      44|     218|     258|       2
---------------------------------------------------------------------------
  199-  247 (50.67/30.45)	SPEKTqgksY...QNarvsdfkYT...PSPPQRHSgSERSRNNNGFESTLERRRA
  248-  292 (54.17/28.46)	SPAPT....YHTKQN...nvnnYTttsSSAPAR...AMREQKDNHLDEKLDSARK
  293-  327 (37.33/17.70)	RLQEN....YQEAQN...akkqRT...MQVLDIHD.IPKPKNKNTF.........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24171 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGDGGNSILTDGDSPEKTQGKSYQNARVSDFKYTPSPPQRHSGSERSRNNNGFESTLERRRASPAPTYHTKQNNVNNYTTTSSSAPARAMREQKDNHLDEKLDSARKRLQENYQEAQNAKKQRTMQVLDIHDIPKPKNKNTFIRKPGGGGLPGRHR
2) GRCRNCDAPESPPQPPRQPAEAASPAWQEEGEEEEEADVDDLGLEEETDE
186
50
341
99










Molecular Recognition Features






MoRF SequenceStartStop




1) DGRLRRAL
2) ESKILAIKDFLE
3) IHDIPKPKNKNTFIRKPGGGGLPGRHR
4
104
315
11
115
341