<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP24169

Description Uncharacterized protein
SequenceMDADGRLRRALSAFGGGDVWDLVDAALAAAAPADLRARRDGIVERLYAGGRCRNCDAPESPPQPPRQPAEAASPAWQEEGEEEEEADVDDLGLEEETDEGGGLESKILAIKDFLEDPDQSEEELVSLLQNLADMDITYKALQETDIGRHVNGLRKHPSGDVRQLVKLLVRKWKEIVDGWVRLHNSGGDGGNSILTDGDSPEKTQGKSYQNARVSDFKYTPSPPQRHSGSERSRNNNGFESTLERRRASPAPTYHTKQNNVNNYTTTSSSAPAVSLTRSSSR
Length281
PositionUnknown
OrganismAegilops tauschii subsp. strangulata (Goatgrass)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Aegilops.
Aromaticity0.05
Grand average of hydropathy-0.895
Instability index72.21
Isoelectric point4.91
Molecular weight30781.24
Publications
PubMed=25035499
PubMed=29158546

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP24169
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.01|      18|      30|      14|      32|       1
---------------------------------------------------------------------------
   14-   32 (27.80/19.69)	FGGGDVWDlVDAALAAAAP
   47-   64 (37.21/22.38)	YAGGRCRN.CDAPESPPQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.53|      17|      25|     231|     250|       7
---------------------------------------------------------------------------
  231-  250 (24.42/20.81)	RSRNNNGFESTlerRRASPA
  256-  272 (29.10/16.55)	KQNNVNNYTTT...SSSAPA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP24169 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGDGGNSILTDGDSPEKTQGKSYQNARVSDFKYTPSPPQRHSGSERSRNNNGFESTLERRRASPAPTYHTKQNNVNNYTTTSSSAPAVSLTRSSSR
2) GRCRNCDAPESPPQPPRQPAEAASPAWQEEGEEEEEADVDDLGLEEETDE
186
50
281
99










Molecular Recognition Features






MoRF SequenceStartStop




1) ADGRLRRAL
2) KWKEIVDG
3) LESKILAIKDFLE
4) RNCDAP
3
171
103
53
11
178
115
58